RNA id: XM_034298371.1


Basic Information

Item Value
RNA id XM_034298371.1
length 2013
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC113533843
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13738543 ~ 13742560 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAGCATCTTTTACATTAGCAGCTCAGCCATTTCACTAACATGCTAGCTAATGTCTAGTAGTAACTTTTTATCATGGAAATTAAGTTACAAAGTACTAGCAGCTAAGACTAGGCTATTATTCTGTGTAACCCAGTAGCCAACATGATAAGCAAGCTAACTGTTCTGTAATTCAAACATTTTGCTAGCAAGTTAGCTAATAAACAGTATGTTGTGTAATTCAAGCCAGTGGCCAAATTCACTATAAATAGTACACAATTCTGTTTGGGTGATAAAAGAAAGACTGATTTGCACCCAGtttttggtttttttcagGACAGGTTTGAAATAGAGCAGTTAGGAAGGAGGCAATAAGAGAGGAGGTGGAAAGCAGAAGGCAGAAGGCTCAGTCTGAAGAAGAAATGGCCCAAACAAAAGGAGAGATGCTGACACAGCTccttaagACCCACATTATGAAGAGCAAATTTAACCTGCACAAGTTGAACCAGCAGTGGCGTTCGAACCTGCGCCAGACTCGAGCATCAGAGCTGCGTGAAGATTTCGCAATACTCAGCCAAACTTTAAAAAGAGTTGTGGACTTCAAGGACAATGTTATTAAGTTATTGGTGTGTGATCTGAGCGAAGCGGAGCAGCAGTCAGAACTGGCTCACAGGGCTCATCTCCAGTGTGTGGATCATCTGCTGGAGGTACAGAAAAGCCGACTGGCAGCACTAGAGTCACACTGGAGCACCAGTCTTAAGGAACTCAGTACTGAGTACAACACAGAGAGgaaaCAACTTTTGAATCTGCATCAGAAGGAGAGTGACTACCTCAAGGCAGAAAACTTTGCCTTGGAGCAGCGCTATGCTGAATTAGACAGTGAGGCCAGACAGGACTATCAGCTTGCACATGATGACATCAAAAACCGGTATATTGGCACGAAGCATGTAATGGAAAGCACATTGGAGGAGTTGCGGCAGTGGTACCTACGAGAACTGCAGAAGTACACAAACGCCACTGATGATCGAAAGAAAACAGCTCTAAATTTGCAATGCGCCATCCAGAAAAGAAACTTGAAGAGGAGGCACATGCAGAAATTGCAGGGCACCATTAAAGCTCTGCGTTCTCATCTGAGCACCAATCAGAGGGAAAATGAGGCATCTGCGTGTGGCCTTCGGGCAGAATGTGAGGAAATTACACAGGAAGTCCAACAGCTCAGAGCTAAGCTCTGCTCTGCACAGGCAGCTGAAAGAACACAGCTAGCTAATCACACTATATACAGCGATAACACAATTAAGAAACTACAGGATATTATAGGAGAGGGAGAGACATTGTTACGTCTGGCTGATGTGTGTCGCAAGCTTGAAACTGAGCAGGAGAAGGTGCTTCCCTTTTACACATCATCTTTATCTGCTGAGGAACTGAGTCAGGAGAAAGCACATGCTATGGAGGCAATGTCTGAAGAGCTAGTACAGACAATGATGGACTATACAGATCTAGAAAAGTTCTGGCAGCGTTACAACAAGGTTCTACTGGAACGTTTGTGTTTAGAACGGGAGAAGAAGGTCCTCAGATGGGAGAACCAGCAGCTGAGGATTCTTCTCAAGCAGTACCTGGATGGAATCTCTGTTAACGACGAGATCCTACAGCAGAGGAACTCACTGCTCATGTTGTCCTGCCCATCACTCCAAGCCTCTCCTGCTTCAgaaagccaaacacacacaagcaggaCAGTCACAGAGGCGTCTCATGTGGTGCAGCATACACTGTAGAGACGAtatcaaaataaaagcaaatataaaaCCAATATTATTCCAAAGACCAAGTTTGAGTCACTTGAGATGTTCTGCTTTTAACTTTATACAGTAATCATGCACTCTGGTGTTCTACAGTACCGGGATGCAGCTATAACTGCTCTAACTAACTCTTCTGTGCATGTCTGTGGGGAAGCTTCTGACATTAACACTAAGACATCGACAGTTTGCCTCCTGATTCCCAACTAGCACAGAACATGTAAAGTAAAGCCATTTgccatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31831 lncRNA downstream 43723 13647447 ~ 13694820 (-) False G26970
TU31830 lncRNA downstream 43723 13655472 ~ 13694820 (-) True G26970
TU31846 lncRNA downstream 52761 13684123 ~ 13685782 (-) True G26985
TU31828 lncRNA downstream 91649 13641164 ~ 13646894 (-) False fkbp11
TU31618 lncRNA downstream 169607 13510376 ~ 13568936 (-) True G26788
TU31888 lncRNA upstream 46535 13788793 ~ 13791366 (-) True G27016
TU31923 lncRNA upstream 93572 13835830 ~ 13836349 (-) False G27043
TU31924 lncRNA upstream 93572 13835830 ~ 13836482 (-) True G27043
TU31990 lncRNA upstream 285044 14027302 ~ 14028884 (-) True G27105
XR_004580178.1 lncRNA upstream 321698 14063956 ~ 14099689 (-) True LOC117599875
XM_026918474.2 mRNA downstream 11469 13707454 ~ 13727074 (-) True acvr1bb
XM_026917278.2 mRNA downstream 91366 13640381 ~ 13647177 (-) True fkbp11
XM_026917285.2 mRNA downstream 91931 13640381 ~ 13646612 (-) False fkbp11
XM_026922243.2 mRNA downstream 103799 13632302 ~ 13634744 (-) True rps26l
XM_026922234.2 mRNA downstream 108997 13626968 ~ 13629546 (-) True rplp2
XM_034311817.1 mRNA upstream 122686 13864944 ~ 13907189 (-) False lhfpl4a
XM_026912752.2 mRNA upstream 131456 13873714 ~ 13907189 (-) False lhfpl4a
XM_026912744.2 mRNA upstream 131456 13873714 ~ 13907189 (-) False lhfpl4a
XM_026912736.2 mRNA upstream 131456 13873714 ~ 13907189 (-) True lhfpl4a
XM_034314008.1 mRNA upstream 288506 14030764 ~ 14044325 (-) True cfap100
TU31814 other downstream 103891 13632262 ~ 13634652 (-) False rps26l
TU31648 other downstream 238559 13498605 ~ 13499984 (-) False slc5a8l
XR_003403751.2 other downstream 499737 13238704 ~ 13238806 (-) True LOC113537313
TU29342 other downstream 3248248 10489293 ~ 10490295 (-) True G24760
TU29080 other downstream 3870265 9863367 ~ 9868278 (-) False G24516
XR_004579719.1 other upstream 131456 13873714 ~ 13907189 (-) False lhfpl4a
TU31994 other upstream 308143 14050401 ~ 14058445 (-) True G27107
trnae-cuc_5 other upstream 650022 14392280 ~ 14392351 (-) True trnae-cuc_5
XR_003403256.2 other upstream 1130690 14872948 ~ 14875990 (-) False pxmp4
XR_003403257.2 other upstream 1130691 14872949 ~ 14875990 (-) False pxmp4

Expression Profile