RNA id: XM_026926279.2


Basic Information

Item Value
RNA id XM_026926279.2
length 3410
RNA type mRNA
GC content 0.45
exon number 10
gene id ppm1j
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13234936 ~ 13251911 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCGCCTCATCCTCCAGGTCCCCCTCCCTCGATTTTGCACACGCTGTAGAGACATTTCGTTTCCAGCTACCAGACCGACATGCAGAACTTGTGTGCCTCCTCAGAGCCTTTCGGATGATCCACACTCGATCGGGCGAGGATTTTTTTTCCGCTATGAGGAGACCATCGTTTGTTAGAACGTCACACGAGCTCAGGAGCGCTGGCTTCCTGCACCGCGCCTCGCCCGCTGCGCCGCTGCGTTTTTCCTTTTAGCTCTCCGAGTTCCGCGCGCTGCAACACCGCACCACAATGATTAGCAAAGTGAAAAACGCCATGTCCTCGCTGGTGGGCGGCATCGTCCCGCAcggccaccaccaccaccaccatcatcatcctcagcagcagcagcagcagagcgGAGCGGACTCTCTGCCCCCGCGCTTCCCGTACGCGCGGCCCGACTTTCTGGAGCTGAGCGCTGAGTTGGTGCAGTACGCGGCCGAGCACGCATCCCGGCCCGTCATTATACTCCGGAGAGACGCCAAGATGCCCTGGCGCACTGGATATGCAGAGGTGATAAATGCAGGAAAGAGTATGCTGAATGAGGACCAGGCCTCGTGTGACGTGCTATACGTGAAGAAGCTCACTAGCAAACAGCAGCGTGCCTCCGTGCTACTAGAAGACAGTGGGGACACCACAGGTATCCCGATGCACTTCTGGGGTGTATTTGATGGTCACGCCGGTACTGGAGCCGCGCTCATGGCCTCCAAACTCCTCCATCGTCTCATCCGAGACCGTTTGTGTGAAGTAGCCCATCTTTTGGAGAATCAGAGCAGCCCACCACCCATCTGCCTAGCTAAGAACGGTAGTCCTTATCAGGCTGAGCAAAAGAAGGGATCCTGCATGGATGCAGAAGACCAGGATGGGCCTGTAGATCCCATCGCTCGGTTCCACATGGAGAAAGTTGTCAATCTGGAAAGCCTGGTGATGGGAATCATAGAGAATGCCTTCAAACAGATGGATGACCTCATTGAAAAGGAGAAGGCATCTTACAGCATTTCTGGAGGATGTTGTGCCTTGACTGCTGTGCATTTGTTAGGGAAACTCTACGTAGCAAATGCAGGTGACAGCAGAGCCATAATTGTTCGCAATGATGAGATTATTCCCATGTCTAATGAGTTCACaccagagagtgagagacagcgGCTGCAGTACCTGGGATTCCTTAAACCAGAACTGCTTGGAAACGAGTTCACACACATTGAGTTTCCCCGACGCATTCAGCACAATGAACTAGGCAAGAAGATGTTATTTAGAGACCACACCATGACTGGGTGGGCATATAAGACAATTATTGAAGATGACCTCAAGTTCCCCCTAATTTATGGAGAGGGGAAAAAGgCCCGAGTCATGGCCACGATTGGAGTAACACGTGGTTTAGGTGATCATGATCTGAAAGTGTACAATTCGAACATTCATATCAAACCTTTCCTATCCTGCTGTCCAGAGGTGAAAGTATACAATATTTCAGAGCACAAGCATGGCTGTGATGACGTCCTCATTATGGGCACTGACGGATTGTGGGATGTGACTTCTGATCAAGAAGTAGCAGATGCAGTGACAAAATTTCTGTCCTGCTGTGAGCCTAATGACCCAATGAGGTATACTTTGGCTGCTCAGGATCTCCTAATGAGGTCTCGTGGTGTTCTGAAAGAGCGGGGTTGGAGGCTGCCCAATGACAGACTGGGATCAGGTGATGACATAACAGTGTTTGTCATCCCATTGGCTGGGGCCGAGTCAGAGACATGATAAGGCAGATCAGTTCCTCTCTGGTGAGCAAATCAGGACACGGCGCTAATTTGCGCCGGCTGAGGAAGGGGTGCAATACCAAAAAATCCATTCTCACTTGAGCTGAAGGGAAAGACGTACGCAttgctcctcttcctccaaCTTCCTCCGAGGAATCATCTCGACTCTTACCTCTTCTTATCAAGCCCGGGATGACATCATCATTAAGTGCCACTCTTCTCACTcaacatttctcacagatttaCTGTGAAAGACTTCAGAATTCACAAAGCCgctgtgatatacagtatatactctGGAAGTCTATTTGGGTGTGAGCCACGATAAGAAGAGAGATTACTGCTAGGTGAATAAACAGGGTCTTTTATACAGGACCTGAAGAAGACCGAGGAATGGGACACTGGTGAAATGAGATGAAATCTTGATGATTAAGGATGTATAGATGAAAGCACTTTATCTTTAGGCATAAACTCATCATCCTGTAATTAAACAAATTCTCCCTCAGCTCATTTAAATGTCTCCAAAGAATGTGTCTATGTAAACACATGCATTTCAGAGACTTTGCAGCAGCTTTATTAAGAAACAAATGTTCACCAACAAAAGAAGGAAAGCACAATTTTCTCATTAGTCCTGATAATGACAGGGTCAAACACATCTCCTTTGGAAAGGAACAATAATATTGTGATTGAGGCAATTGTGTAGAATTGTATTGTGGCACTtatgggcagtggtagctcgTTGGTTAAGATGCTGGACTACTGATTTGAAGATcatgaattcaaatcccagcgccatcaagctgccactgctgggcaaggcccttaaccctcagctgttcatttatataaatgagataaaatgtaagtttctctggtgtctgccaaatgccataaatgtaaatgagacaTACTACTGTAACCATGACAAAGCTTCTGGAAATTAGTGGCCATCATTTCAACTCTTGCACATTTGACTAAACCCGGGTTCCCTACCTCTCCACAAAGCCATGTTCACAATGAACCTAAAAACTTGCAAGGAGGTGGATTTTTGATTATAATCAAACCCAGATGCATTATTTGTGCACACTACTTTTCACTTAATCTGTAGTTTATGGGCTAGCTTTTTTCTGAGCCAAGTTTAGAAGCTTATTATATATTGAGAATCCCTATTAAAGCAGCTTTTAGTCCAAGATCAGCACTTATATGGAACCTAGAAACTTACCGTTCatgatgaatttattattataatatattgttACTATAACATTCACCTGACGTACCATATTTGTAAAAATGGGTTGAAAAGGGTTTTAGGTGGCAGCTAGATTACTACAAATGATGTTTTAATGCCAATACATCTCAACATTAGAACCAAGGTCCTGAACATCAACACCTGAACTTTATTTCAATATACCATGCTTAAATGATCTTGAAGTGAACAACCAATTGTGAATATAAATCTGAACATTTGAACTGATGGCTGACTGCtaacaaactttattttttgctaTAACATGTTTAGTTGCATTACCAATCCTGCTGACTGTTTTATCATTTGTCAAGCTGTAACACCTAAGCAACTGTGATTCCTTCACAATAAATCTCCCATctttgaataaatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31421 lncRNA downstream 58777 13175077 ~ 13176159 (-) True G26613
TU31418 lncRNA downstream 65274 13169253 ~ 13169662 (-) True G26610
TU31379 lncRNA downstream 128850 13104457 ~ 13106086 (-) True G26585
TU31363 lncRNA downstream 164113 13070595 ~ 13070823 (-) True G26570
TU31148 lncRNA downstream 433703 12801007 ~ 12801233 (-) True G26387
TU31647 lncRNA upstream 241601 13493512 ~ 13495861 (-) False slc5a8l
TU31618 lncRNA upstream 258465 13510376 ~ 13568936 (-) True G26788
TU31828 lncRNA upstream 389253 13641164 ~ 13646894 (-) False fkbp11
TU31831 lncRNA upstream 395536 13647447 ~ 13694820 (-) False G26970
TU31830 lncRNA upstream 403561 13655472 ~ 13694820 (-) True G26970
XM_026922711.2 mRNA downstream 3196 13214941 ~ 13231740 (-) True rhoca
XM_026927218.2 mRNA downstream 45387 13177828 ~ 13189549 (-) True capza1a
XM_026927351.2 mRNA downstream 61266 13161489 ~ 13173670 (-) True st7l
XM_026916743.2 mRNA downstream 176169 13042395 ~ 13058767 (-) True slc2a1b
XM_034310894.1 mRNA downstream 261382 12949685 ~ 12973554 (-) False si:dkey-166d12.2
XM_026926108.2 mRNA upstream 238283 13490194 ~ 13493259 (-) False si:ch211-105j21.9
XM_026926098.2 mRNA upstream 238283 13490194 ~ 13493259 (-) True si:ch211-105j21.9
XM_026921607.2 mRNA upstream 241601 13493512 ~ 13502170 (-) True slc5a8l
XM_026914240.2 mRNA upstream 264269 13516180 ~ 13530635 (-) True tspan2a
XM_034298028.1 mRNA upstream 281070 13532981 ~ 13544134 (-) False ngfb
TU29342 other downstream 2744641 10489293 ~ 10490295 (-) True G24760
TU29080 other downstream 3366658 9863367 ~ 9868278 (-) False G24516
TU28828 other downstream 3515966 9715527 ~ 9718970 (-) False tnnt2b
TU28673 other downstream 3793126 9435563 ~ 9441810 (-) False tusc2a
TU28036 other downstream 4750822 8481051 ~ 8484114 (-) False tcta
TU31648 other upstream 246694 13498605 ~ 13499984 (-) False slc5a8l
TU31814 other upstream 380351 13632262 ~ 13634652 (-) False rps26l
XR_004579719.1 other upstream 621803 13873714 ~ 13907189 (-) False lhfpl4a
TU31994 other upstream 798490 14050401 ~ 14058445 (-) True G27107
trnae-cuc_5 other upstream 1140369 14392280 ~ 14392351 (-) True trnae-cuc_5

Expression Profile