RNA id: XM_026927035.2


Basic Information

Item Value
RNA id XM_026927035.2
length 3662
RNA type mRNA
GC content 0.43
exon number 3
gene id lrrc8c
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18116405 ~ 18126912 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTATTAAAGAAAAGCTTGACTCGGTTGACGACAGCCTCCGGCGGCGGAGAAGGTCACTGCAGCTCATTTGTGATTTgagcaggaagagagagagagagagggagagagagagagagacgaggtCTACACCGCAGTCCCAAGGACATGCCGCCTCCCTCCTTCATTTATCCCCTAAAAACCCGCTCGTGCTCTTCCATTTTCGGgGAAAATGATTCCGGTCACGGAATTCCGTCAGTTCTCAGAACAGCAGCCGGCGTTCCGAGTCCTAAAGCCATGGTGGGATGTCTTCGCCGAATATCTCTCTGTGGTCATGCTCATGATTGGCGTGTTTGGCTGCACGCTGCAGGTAATGCAGGACAAAATCATATGTCTTCCTCAAAGGGTGTCTGCCCCAAACCAAACGGTGCCTTCACTGAATCAGACGGAGCTCACAAGGGATCCAACCAATTCCTCTCTTCCCCCTGTCTCCCCAGTGCCTGTATCCTATGAGATGAAGGGACTCAAAACCAATTTGGATCTGCAGCAGTACAGCTTTGTAAATCAACTGTGCTATGAAAAAGCTCTGCATTGGTATGCCAAGTATTTTCCTTACCTGGTGCTCATACATACCCTTGTATTCATGGCGTGCAGTAATTTCTGGTTCAAATTCCCTGGCTCAAGCTCAAAAATTGAGCACTTCATCTCCATATTGGGCAAATGTTTTGATTCTCCATGGACTACGAGGGCTTTGTCTGAGGTGTCAGGAGAGAGTCCGGAGGAGAAAGACCACAAAAAGAACAGTGCAAGTAGATCAAACCTTAATACTTCCACTGGGGAGGGTAATCTGGAGAAGACCCAATCGCTGAGATCTATTCCTGAAAGGATCGTAGTGGACAAACCAACAGCGAGTGCACTTGACAAGAAGGAAGGAGAGCAAGCCAAAGCGCTGTTTGAGAAGGTAAAAAAGTTCCGACTTCACGTGGAGGAAGGGGATTTGTTGTATCTCATGTATGTTCGACAGACTGTAATTAAAGTGATCAAGTTTGTTCTTATAGTAGCCTACAACAGTGTTCTGGTGTCGAAGGTTAGAATTACAGTTCAGTGTGAAGCAGACGTAGAGAATATGACGGGCTACAAAAAATTTTTGTGCAATCACACCATGGCCCATCTCTTCTCCAAGCTCTGCTACTGCtatttgtgttttgtaattGTCTATGGATTAACATGCCTTTATACATCATACTGGCTTTTCTACCGTTCTCTGAAAGAGTACTCTTTTGAATACGTGCGGCAGGAGACTGGAATTGACGACATCCCGgatgtgaaaaatgattttgcttttatgttgCACATGATTGACCAATATGATCCACTGTATTCCAAGAGGTTTGCAGTGTTTCTGTCTGAGGTGAGTGAAAACAAGCTAAAACAACTCAATCTGAACCATGAGTGGACAGTAGAAAAACTTCGCCAAAAGCTACAGACCAATGCCAGTGACCGACTGGAGCTTCAGCTCTTCATGCTCTCAGGGCTTCCAGATACAGTCTTCGAGGTCATTGAGCTGCAATCCTTGAAATTGgagattataaataatgtcacaaTCCCTGCAGCCATTTCCCAGCTAGAAGATCTTCAGGAGCTTTCTCTGCACCAGTGCACACTCAAAATCCACACAGGGGCCCTCTCTTTCCTGAAAGAAAACCTTAAAGTTCTGCGTGTGAAGTTTGATGACAACCGTGAGCTTCCTCTGTGGCTCTACAGTCTTCGGAACTTAGAGGAACTCCATCTAATCGGATCTCTGAGTCCAGATGCATCAAAGAACATAACCCTGGACTCTTTACGTGACCTCAAGTCCCTTAAGACCTTGACACTCAAAAGCAACCTTACGAAGATCCCCCAGTCAGTTGTGGATGTGTCCAGCCACCTGCAGCGTCTGTATGTGCACAATGACGGCACCAAGCTGGTCATGCTGAACAACCTCAAGAAAATGGTGCATCTTATAGAGCTTGAGCTGGTTCATTGTGACCTTGAACGCATTCCGCATGCTATCTTCAGTCTGACCCACCTGCAGGAGCTGGACCTTAAGGAGAACAGCTTGCGCTCTGTtgaggagatcatcagtttccaGCACCTCCGGAAACTCACGTGCCTAAAGCTGTGGCACAATGCAATCACTCACATCCCTGAGCATATCAAGAAGCTGAGCAGTTTGGAGCGCCTCTATTTTAGCCACAACAAGATTGAGATTTTGCCCTCGCACCTGTTTCTGTGCAACAAGCTACGCCATCTTGACCTTTCCCACAATGACATCAGCTTCATTCCTCCAGAAGTAGGTGTTCTGCAGAGCCTTCAGTACTTCTCCCTCTCTAGCAACAAAATCGAGAACCTCCCAGATGAACTGTTCTTCTGCAAGAAGCTGAAGACCCTCAAGCTCGGGAGGAACATGCTTTCTGTGCTCTCACCAAAGATTTCCTACCTGGCTTCACTGACTTATTTGGAGTTAAAGGGCAATCATTTTGAAGTTTTGCCAGCTGAGCTTGGCTGCTGTCAAGCCTTGAAGCGCAGTGGCCTTGTGGTAGAAGACACCCTCTTTGACACTCTGCCTTCAGAAGTCAGGGATAATATGAAAGCAGAGTGATGTTTCTTAGCCTTGGTAAAATTcctcaaatgtttaaaaaaaggcagCATTACGAATTCTTTTTAACTGAACTTGTATCCCACTCCCACACATATTTTGACTTTACGGGTGAGTAGATGCTTTTAAATGCTTAGATATTTGAAAGCAAATGTTATCTTATTAACAAAAGCAAGTCTCTTTGGAGTAGAATTTAGTGTTGTATTGTACCTCAAAGTTGATGTAGTTGTTTCAATGTTTTAAGACAATGTTACATTAGATCATTCATTTATATAAGCACCTTATTATGTGTAATTCTCTACCATATCAAAGAATAGAGATAAGCCTCAGTGTTAATGTGTATTCCAAGACAGTCATTGCATTGCATGTGTTATATTACTAATAATGTTGAGGATATCATTATCTATGTCAAGGTTTTACAAAACAAGTACTGAACCATGCTAGGCTGCCAAAGTGCAGTATTTTACCTTTGTAAAGACCAAATGACCTTTGCAGCCTCTTTAAGGTTGCTAACAGTGATAGATGGAGAAGGGCTTTTCATGTGTAGTGGTTATATGCCATACAATTTTGGACATTTAGGCCAGATCTGTCACAACTCTTTTGTTTGAAGCCGATCATGTAAAATGACTCATTGTCCCAGTTTTTACACTAAACCAAGTTCAGTGAGTGAGTGGCTCCTGTAATAGAAACAGACTGGAATACCAGGCTACTACAGAGGTTCTACCATGCACAGTTTATCTGTGGCATTTATGATATTTCTCCTTTTGTTACATCaaaactatgatttttttttttttttttttcctccacataAACATCAGTCAGACCAAACATAAATTTCACAGTGCAGAAAAGttaattcactgaaggggaaaggacgtgaAAATCATTGTTTCTGGTAGCGGGGAACTTTTTCGCTGACTTTATCCATGAGAACAATGATTTTGTAAATTCACAAGCCttggtcttgtgagccaatagtaACCTAGTGGGTGGTACCATAGTCTCTCTGGTCAGCAAATAAAATGGAGGAGCTGTTTAGTTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34503 lncRNA downstream 273585 17784475 ~ 17842820 (-) False G29237
TU34502 lncRNA downstream 273585 17839562 ~ 17842820 (-) True G29237
TU34488 lncRNA downstream 402040 17700761 ~ 17714365 (-) True G29223
TU34475 lncRNA downstream 478388 17637327 ~ 17638017 (-) True G29213
TU34457 lncRNA downstream 604950 17487361 ~ 17511455 (-) True G29196
TU34596 lncRNA upstream 21317 18148228 ~ 18148749 (-) False zgc:153916
TU34718 lncRNA upstream 325557 18452468 ~ 18452976 (-) True G29439
TU34829 lncRNA upstream 487446 18614357 ~ 18614724 (-) True G29541
TU34830 lncRNA upstream 487958 18614869 ~ 18615874 (-) True G29542
TU34839 lncRNA upstream 507167 18634078 ~ 18634357 (-) True G29551
XM_034314495.1 mRNA downstream 10126 18094167 ~ 18106279 (-) False lrrc8db
XM_026920117.2 mRNA downstream 10126 18094167 ~ 18106279 (-) True lrrc8db
XM_026920109.2 mRNA downstream 12495 18094167 ~ 18103910 (-) False lrrc8db
XM_026920125.2 mRNA downstream 13878 18094167 ~ 18102527 (-) False lrrc8db
XM_026920134.2 mRNA downstream 16711 18094167 ~ 18099694 (-) False lrrc8db
XM_026917991.2 mRNA upstream 21374 18148285 ~ 18195628 (-) True zgc:153916
XM_026920882.2 mRNA upstream 322346 18449257 ~ 18464571 (-) False lmo4b
XM_026920872.2 mRNA upstream 322346 18449257 ~ 18464571 (-) True lmo4b
XM_026916382.2 mRNA upstream 374627 18501538 ~ 18585762 (-) True hs2st1b
XM_026916472.2 mRNA upstream 376006 18502917 ~ 18586226 (-) False hs2st1b
TU34546 other downstream 43496 18070987 ~ 18072909 (-) True G29279
TU34529 other downstream 166687 17949157 ~ 17949718 (-) True G29263
XR_004577384.1 other downstream 587090 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34409 other downstream 836232 17272955 ~ 17280173 (-) True G29158
TU32920 other downstream 2647176 15461950 ~ 15469229 (-) False oxtr
trnae-cuc_6 other upstream 450313 18577224 ~ 18577295 (-) True trnae-cuc_6
TU34886 other upstream 667121 18794032 ~ 18806750 (-) False LOC113537624
trnag-ucc other upstream 689348 18816259 ~ 18816330 (-) True trnag-ucc
trnap-ugg other upstream 690216 18817127 ~ 18817198 (-) True trnap-ugg
trnap-ugg_1 other upstream 1253530 19380441 ~ 19380512 (-) True trnap-ugg_1

Expression Profile