RNA id: XM_026927104.2


Basic Information

Item Value
RNA id XM_026927104.2
length 2088
RNA type mRNA
GC content 0.46
exon number 6
gene id si:ch211-157b11.8
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16221165 ~ 16225200 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agagacagagggagggataGAGGGTTGGAAGAGGAGATCAAATAAGAAGAGAAAGACAGCAGAAGTTTCAGAAAGATGAGAGCATGGAAGTGAGTGTGTTGGCATGGTAAAGACTTACACACGTAAAGACGCATAGAGAAGGCACAATATTATTAGACCTAATTGGCACAGATTTGAAGGGAAAAAGCCCAAGCACTATTTATTTGAAACACTGGGGTGCTAAGAAGGTCCTAGGTGGAGGAATAAAGGAGACAAGAGTTTGTGCGGAAGATTGGTGAGAGGCAGCGGGAGTCATCTGACAGTTGAGTGCAGTCACTTGTTGGTACACCTCTTGCTTTCCCATGAGTGTCCTTagcagtgtgtgcatgtgtgtgtgcattctacGCTGGCTtttgctgggtgtgtgtgtgatgtgtctgtgtgtagtgtgtcaGAGGGACAGTTTGGTGGCTGGGCCACCCAACCGAAGGTGTGAGGGGGGCTGCAGTGCAACAGCATCTCCCCCAaaaacacacctcacacacaggaAGGACACAGTGCCCAGAAAAACACAGGAGCCTCTCCAAAGAAACACACAGtCATCTTCCATGTCGGAACGTCTGATGCAGCTACAGCGGTGTATGAAACAACATGAACCAGCCTCAGGAAATCGAAGAGATGGATCCGATTCCctggcagccattttggctCTAATGACGGCTGTGCTTACCGAGTGTGACCTGCACTGCCACAGTCAGAGACTTAGAGACATGGCTGGCAGGCTAGagagtgCAGCAGTggggaaaaatggagaaaaagactTGCTGCTATTGATGAAGAGCATCACACAATCTGGCTCACCACCAACACAAAGTGCTTTAACAgTGTCTCCCTCTGCAGGACTTTATCCACAGAATTGCTACGAGATCTTTCAGTTTGGAATAAAAGAGAATGGAATTTATACCATCCAACCAGACCCTCAAAAACCAGCACTGGAGGCTGCGTGTGATATGGAGTCTGCAGGAGGTGGGTGGACAGTGTTTCAGCGTCGATTCGATGGACAAGTGGACTTTAACCGGACCTGGCGGGAGTATCGGGATGGCTTTGGTTCTTCACAAAAGGAGCACTGGTTAGGGAATGGAGTTCTACATGCTCTTACAGCCAGAGGGCAACACACACTCCGCATCACTCTCCAGGACTGGCATCACCAGACCCGACATGCCATCTACAACAACTTTAAAGTGGCAGCAGAAAACCAGAGGTTTCGTCTGACTGCACAAAATTACCAAGGAGATGCCGGTAATGCCCTCAGCTACAGTAAGCACTACAACCATGATGGCAGAGCTTTCAGCACATATGATCACGATCATGATCGCTATGCAGCTGGTAACTGTGCTCAGTACTACGGTGCAGGCTGGTGGTTTGATTCCTGTTTGGCTGCCAATCTGAATGGACGTTACTACCGTGGCCGCTACACTGGCATCACAGATGGCATCTACTGGGGCACCTGGTACATTCTCACTGACTCTCGAAGTGGGGAGAGATACTCGTTTAAAAGTGTGGAGATGAAAACACGACCCAGACAGCCTTAAAATAATCTTCTACATATACCCATACAACATACACAAATTATGCAATGCTACTTTCAGTATTTATACTACACTAAAACTATAGTGCATGGTACCATTTACAATATCATATTTAAAATAgggtcagtgatttttaagtCAGTACACTTTATGTTTAGCAAAGTTATCCTCATATTCTGGCAGCTCAGGTCTCTGTGGCCTCCCAGGGTCTGTAAattggagaagaaaaaaatggatgtgGATAACCAAAATCCAACCAATCAAGTCAAGGAGACTTCTATATTTGCCTGTAAATTACATTACTTGTTAATTCAGCAAGCTTCAGGTATTCTAGCCTAAGTAGCACGTGTGTGTTCTGGGTACGCAGCTTTGGCGAGAACACGGAAGGGAGAGACTATTCCTGCTTGTATTTTAAGTTTCAAAACAGCTAGCTTAAGGTACCTTCTGCTAAAAATCACTGAATGTATATGGCAAGACTTTTTATAGCCAATTGTATGCGAATATGTTTGTGAAAATAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33415 lncRNA downstream 24298 16196574 ~ 16196867 (-) True G28331
TU33409 lncRNA downstream 39447 16181075 ~ 16181718 (-) True G28325
TU33332 lncRNA downstream 94866 16125904 ~ 16126299 (-) False eif4enif1
TU33333 lncRNA downstream 94866 16125926 ~ 16126299 (-) False eif4enif1
TU33349 lncRNA downstream 98216 16122729 ~ 16122949 (-) True G28278
TU33464 lncRNA upstream 33658 16258858 ~ 16259163 (-) True G28376
TU33463 lncRNA upstream 34236 16259436 ~ 16260312 (-) True G28375
TU33471 lncRNA upstream 38414 16263614 ~ 16264242 (-) True G28383
TU33472 lncRNA upstream 39724 16264924 ~ 16265160 (-) True G28384
TU33473 lncRNA upstream 41356 16266556 ~ 16266755 (-) True G28385
XM_034311370.1 mRNA downstream 11203 16202388 ~ 16209962 (-) False gata2b
XM_026917189.2 mRNA downstream 11203 16202388 ~ 16209962 (-) True gata2b
XM_026922252.2 mRNA downstream 33285 16182517 ~ 16187880 (-) True ruvbl1
XM_026931602.2 mRNA downstream 46053 16172670 ~ 16175112 (-) True c2h1orf74
XM_034297700.1 mRNA downstream 85476 16125830 ~ 16135689 (-) False eif4enif1
XM_034299722.1 mRNA upstream 46668 16271868 ~ 16281761 (-) True slc26a6l
XM_034300126.1 mRNA upstream 62971 16288171 ~ 16299906 (-) False iho1
XM_034300121.1 mRNA upstream 62971 16288171 ~ 16299905 (-) True iho1
XM_026928839.2 mRNA upstream 62971 16288171 ~ 16296013 (-) False iho1
XM_034300109.1 mRNA upstream 62971 16288171 ~ 16296013 (-) False iho1
TU32920 other downstream 751936 15461950 ~ 15469229 (-) False oxtr
TU32916 other downstream 760164 15456635 ~ 15461001 (-) True G27925
TU32819 other downstream 922146 15297309 ~ 15299019 (-) True G27843
XR_003403256.2 other downstream 1345175 14872948 ~ 14875990 (-) False pxmp4
TU34409 other upstream 1047755 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 1288512 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34529 other upstream 1723957 17949157 ~ 17949718 (-) True G29263
TU34546 other upstream 1845787 18070987 ~ 18072909 (-) True G29279
trnae-cuc_6 other upstream 2352024 18577224 ~ 18577295 (-) True trnae-cuc_6

Expression Profile