RNA id: XM_026927117.2


Basic Information

Item Value
RNA id XM_026927117.2
length 3186
RNA type mRNA
GC content 0.45
exon number 18
gene id prkcda
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16419260 ~ 16430096 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAACCGGCTGCAGGAAAGATCAAAGAAAATGACATAAGGGAAACCACGTCCAAAACCACATATTAGCATACAAAGTAGTGTGTCAAAGTTGTACATCACCTATAGTTTGCATACTCTTTACTGCACAGTGGTGTGCGGTTTAGGACGCAGCCACAGAAAGAGCGCGAGCACCTGGGCGACGTCACTCCGCCCCACTTCGTCCTCGAGCGAGCTGCACTTCTTCCAGCGCACAACGAGAAAACAGGCGGAGGGGAGCGAGGAAGAGAAAAGCCTCTCTTTTGGAAGAGAGGCTGTGTGCGAGAGGTCACCATGGCCCCCTTCCTGAGGATCACCTTTAACGCCTATGAATTAGGCGTCCTCCCCCCGGTGGCTGAAGCGCCATTCTGTGCAGTCAAGCTTAAGGAGTCGCTCAGCACagACCGAGGGAAGACCCTGATTCAGAGGAAGCCTACCATGTTTCCTGCATGGCGCGCCAGTTTCGATGCACATATTTATGAAGGACGCGTGCTCCAGGTTCTGCTTATGCGCACTGCTGATGAGCCATTAGCAGAAGTCACACTCGGTGTATCTGTTCTAGCAGAGCGGTGCAAGAAAGCCAGTGGCCGTTCAGAGTTTTGGGTTGATCTGCAGCCTTCAGGAAAAGTGATGATGGCTGTTCAGTATTTCCTGGAAGATACGGACACAGAGTCTCGTCAGTCGGTAGGGACAGAGGAAGAAGCCCCGACTCTAAATCGGCGTCGCGGGGCCATTAAACAGGCCAAAATTCACTTCATCAAAAACCATGAGTTCATCGCCACCTTCTTTAGACAACCCACTTTTTGCTCTGTGTGCAGAGACTTTGTCTgGGGGTTGAACAAGCAAGGATACAAATGTAGACaatgcaatgcagctattcATAAGAAGTGTATTGATAAAATCATTGGCAGATGCACTGGTACAGCGGCCAACAGTCGGGACACTATGTTTCAGAAGGAGCGCTTTAAAATTGACATGCCACACCGCTTTAAGACCTACAACTACATGAGCCCCACCTTTTGTGACCACTGTGGGAGTCTGTTGTGGGGTCTCGTCAAGCAGGGACTGAAGTGTGAGGACTGTGCTATGAATGTGCATCATAAGTGCCAGACTAAAGTGGCCAACCTTTGTGGAATCAACCAGAAACTATTGGCTGAGGCTCTCACTCAAGTTGgccagAAGTCCACAAAGAGGTCTGAATCAAACACACAGGATACTGGAGTTTACGCTGGAGATTTCAACAAAAGCCCAGGACCTGATGTTAATgATGGTCCTCTATATGGCCGTCCCTGGGAAGGGTCAAGTCCTCACCCTCCATCTCGGATCACGCACCAAACACGCATCACAGCCGAGCAGTTCACCTTTCATAAAGTCCTGGGCAAGGGAAGCTTTGGCAAGGTGTTTTTGGCTGAGTTAAAGAACGGTGGGGAATGGTTTGCAGTGAAAGCCCTAAAGAAAGACGTAGTGTTGATAGATGATGATGTAGAATGCACCATGGTGGAAAAGCGGGTGCTGGCTCTTGCCTGGGATAATCCATTCCTTACACACCTCTACTCCACTTTTCAAACCAAGgagcACTTGTTCTTTGTGATGGAGTATCTGAATGGAGGAGACTTGATGTTCCATATACAGGAAAAAGGACGTTTTGACCTCTACAGAGCCACATTCTATGCAGCTGAAATTGTATGTGGACTACAGTTCCTGCATGGAAAAGGCATCATCTACAGGGATCTGAAGCTGGATAATGTAATGCTAGATGGAGAGGGTCATATAAAGATTGCTGATTTTGGCATGTGTAAGGAGAACGTCTTTGGAGACAATTTTGCCACGACATTCTGTGGAACCCCAGACTACATTGCCCCTGAGATCTTATTAGGTCAGCAGTATTCATTCTCCGTGGACTGGTGGTCATTTGGTGTACTGGTGTACgagatgctgattggtcagtccCCATTCCATGGCGATGATGAGGATGAACTTTTTGAGTCAATCCGCATGGACACGCCTCATTACCCCCGCTGGATCACAGTGGAAACCAGAGACATGCTAGAgcggCTGTTTGAGCGGGACCCTTCTCATCGTTTGGGTATTGTGGGTAATATCCGAGCTCATCCATTCTTTAAGACTGTTAACTGGTCTGCtttagaaaagagagaaattgaaCCCCCTTTCCGGCCACAAGTGAAAGCCCCCAATGACTGCAGTAACTTTGACCGAGAGTTTTTAAATGAGAAGCCCCGCCTCTCTCAATGTGAGAAAAGTTTGATTGACTCAATGGACCAGAGCGCCTTTGCTGGCTTCTCATTCATTAATCCAAGAATGGAGCACCTCCTGCAGAAGTGACAGACGACACACACCTCCATCTCTTAGCATAGGAGGAAAAGGTCCAATACGATTATAACGTTGAAGTTTAAAGCCAATATTTTTCTGTCACAAACAGGTGAACAAGCTGTCCTTTCGCAGAATAAAGTTTTCAAATCATATATAGACTGCAACATGTTagataaatgaattttaaacacTGAAGCATTGCATCATGTTCTTTCATTAAGATAGGTGGTGTAGAGGTGATAACTAGACCTCCAAGTTAGGTATTCCATTTTTTGGCAAGGCCCTTTCAAGTCTATGTAGACTTAGTTTTATTCAATTAGTTCTTTTGTCAATAGTAACCCATTTATTACTGCATTAATGGTGTGCATAAACACTGATAATGTTTTTACAGAGATAAGGTTAGATGTTTggatgaataaaaaagtaaattgaAGGGGGGCAGAAAGAACAGCAGAGCATTTAGATTATTGTAAGTGAAGGTGTGCTTCTGAGGCTGTCTTGCGTTGATGTATAACATAGTGCTGTGAATTTGAACTTTATGTATATGCGCATATGGTGTATGTCATGTGCAAACATATTGAGtccttgtgtatgtgtgtattattaggAATTAAGGAAATTAAACCATGgattttaatatgtatattaatgAAGCATGTTTGCACAGATGTTTAACCTTAAAATAAGCATGAGTGTGAGTCTTATACTGTGCACTGTAAATTAAGAAGATGTACATATATCTGGTAGAGGTGCTCTTGGCTTGATGTATATGCATATTGTTGCgtttaagctttatttattatctgCCATTAAACATGAGCACACGATCAAACTTGCAA

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007049 cell cycle biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0005634 nucleus cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004697 protein kinase C activity molecular_function

KEGG:

id description
K06068 PRKCD; novel protein kinase C delta type

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33626 lncRNA downstream 59739 16358139 ~ 16359521 (-) True G28508
TU33633 lncRNA downstream 89839 16329108 ~ 16329421 (-) True G28515
TU33473 lncRNA downstream 152505 16266556 ~ 16266755 (-) True G28385
TU33472 lncRNA downstream 154100 16264924 ~ 16265160 (-) True G28384
TU33471 lncRNA downstream 155018 16263614 ~ 16264242 (-) True G28383
TU33656 lncRNA upstream 32006 16462102 ~ 16463933 (-) True G28537
TU33657 lncRNA upstream 32006 16462102 ~ 16489915 (-) False G28537
TU33936 lncRNA upstream 140694 16570790 ~ 16571524 (-) True G28779
TU34351 lncRNA upstream 623992 17054088 ~ 17054656 (-) True G29119
TU34418 lncRNA upstream 963362 17393458 ~ 17394467 (-) True G29167
XM_026938056.2 mRNA downstream 2441 16406576 ~ 16416819 (-) True ddi2
XM_026938137.2 mRNA downstream 2441 16409528 ~ 16416819 (-) False ddi2
XM_034310450.1 mRNA downstream 12778 16400949 ~ 16406482 (-) False si:ch73-15b2.5
XM_026938250.2 mRNA downstream 12778 16400949 ~ 16406482 (-) True si:ch73-15b2.5
XM_026938369.2 mRNA downstream 20859 16394241 ~ 16398401 (-) True LOC113541386
XM_034298008.1 mRNA upstream 6744 16436840 ~ 16454566 (-) True LOC113531657
XM_034310370.1 mRNA upstream 46329 16476425 ~ 16488929 (-) True rad54l
XM_026909859.2 mRNA upstream 61585 16491681 ~ 16519158 (-) True LOC113523777
XM_034312439.1 mRNA upstream 104672 16534768 ~ 16586246 (-) False st3gal3a
XM_034312444.1 mRNA upstream 104672 16534768 ~ 16586244 (-) False st3gal3a
TU32920 other downstream 950031 15461950 ~ 15469229 (-) False oxtr
TU32916 other downstream 958259 15456635 ~ 15461001 (-) True G27925
TU32819 other downstream 1120241 15297309 ~ 15299019 (-) True G27843
XR_003403256.2 other downstream 1543270 14872948 ~ 14875990 (-) False pxmp4
TU34409 other upstream 842859 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 1083616 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34529 other upstream 1519061 17949157 ~ 17949718 (-) True G29263
TU34546 other upstream 1640891 18070987 ~ 18072909 (-) True G29279
trnae-cuc_6 other upstream 2147128 18577224 ~ 18577295 (-) True trnae-cuc_6

Expression Profile