RNA id: XM_026927143.2


Basic Information

Item Value
RNA id XM_026927143.2
length 1229
RNA type mRNA
GC content 0.41
exon number 7
gene id mrpl47
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20324858 ~ 20328459 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

caaCATTGACATTGCTTTTCAAGATGGCCGCGGCCACTGCATGCCGTCTTGCCGCAGTTTGCAGACAATTTCAAAGCGTTGTTAAAATATCTTTGCCAAACAAAGCTCAATATTCATCGCATACCTTGGTTAGATATCATTCCTGCTTACAaagGCAAAACTACAGTCCTTTTCGATTCAGCCGTCCTGAACATGCTCGCCTTGTGCACACATCCTCCAGCAGATGGGGTCTTGAGGAATTCTTTGACCTGCCTGAAAACTGGGGAGAGACTGCAGTTAAATCAGGTTCTCCATGGACAGTCAAACAGCTTAGAGCAAAGAGTAATGAAGACTTGCACAAGCTATGGTATGTTCTTCTAAAGGAAAAGAATATGTTGCATACTATAGAACAAGAGGCGAAAAGGCAGTGTGTTCCGATGCCTAGTCCAGAACGCATTAAGAAGGTGGAAAGATCTATGCAGAGGCTTGACACCGTTGTGAAAGAGCGAGAAGACGCCCTCCGTTTACTACAGACAGGACAAGAAAAAGCCAGACCTGGAGAATGGAGGAGAAACGTTTTTGGCAAAATGTTCTGGTACCGTTTTAGAGAACACCCTGTCCCCTGGTACATGAACAAGATCTACAAGAGGAAACGTTTCTATACACCATCATTTGTTAGCCCTTATACAAGGCTAAGTCTTGAGAAGCACCTGAGGAGTAAAGCAAGGAGacaaaggagagagaaacaaaatCAGAAGAAACTGACTGAGGTTTTCCCTAAAAAGACTGCACAAGCATGAGACGGCCGAGGCTAAAAGTCAATGTTGCTAATTATATGAACCCATTTCTTCATGTGTGGATTGATCCCTGGCCTTTTATACTGGTGTTAGCTTATTAATGAAGTCTTAATGCAGGTGCAGCACAGCATTTCAGTCAGGACTTGCTCTGAGTAAAGCACTGAGTATGGATTATATAAGATGTCTGTGTTCTGAGTGCTATGTGAAAATTGAAATTGACTTCTGAAAGGCATCTCGCATCTCTGAGTAATTCTTAATTATTTGACTGGTCATTTTGGACATGATGGCTTCTGCTGTTTGCATCAGATTGATAGAGAAACTAAATATCAATAATGCAAGTTTCAAATGCATAATGATCCATGATACAAAGAAACTTAAACACAAAGCTGTcacaaaaaaactttattttcaaaatagcCAATTGCTGATTAAAAACACAAGtagtttactgta

Function

GO:

id name namespace
GO:0005840 ribosome cellular_component

KEGG:

id description
K17428 MRPL47, NCM1; large subunit ribosomal protein L47

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35920 lncRNA downstream 9347 20314838 ~ 20315511 (-) True G30428
TU35912 lncRNA downstream 76349 20248166 ~ 20248509 (-) True G30423
TU35911 lncRNA downstream 77521 20247111 ~ 20247337 (-) True G30422
TU35910 lncRNA downstream 77987 20246605 ~ 20246871 (-) True G30421
TU35898 lncRNA downstream 117126 20199533 ~ 20207732 (-) True G30412
TU35992 lncRNA upstream 31382 20359841 ~ 20360828 (-) False pex5la
TU36004 lncRNA upstream 75750 20404209 ~ 20404408 (-) True G30507
TU36047 lncRNA upstream 151653 20480112 ~ 20480726 (-) True G30550
TU36048 lncRNA upstream 152721 20481180 ~ 20482701 (-) True G30551
TU36049 lncRNA upstream 164025 20492484 ~ 20495517 (-) True G30552
XM_026943439.2 mRNA downstream 14632 20265313 ~ 20310226 (-) True tmem131
XM_026926703.2 mRNA downstream 66305 20250115 ~ 20258553 (-) False LOC113534100
XM_034311024.1 mRNA downstream 66305 20250115 ~ 20258553 (-) True LOC113534100
XM_026923896.2 mRNA downstream 78850 20207755 ~ 20246008 (-) False nme7
XM_026917435.2 mRNA upstream 31263 20359722 ~ 20429325 (-) False pex5la
XM_026917418.2 mRNA upstream 31263 20359722 ~ 20429325 (-) False pex5la
XM_026917428.2 mRNA upstream 31263 20359722 ~ 20429325 (-) False pex5la
XM_026917411.2 mRNA upstream 31263 20359722 ~ 20429325 (-) True pex5la
XM_034311575.1 mRNA upstream 355088 20683547 ~ 20814820 (-) False lrrc7
trnap-cgg_1 other downstream 938345 19386442 ~ 19386513 (-) True trnap-cgg_1
trnap-ugg_1 other downstream 944346 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-ugg other downstream 1507660 18817127 ~ 18817198 (-) True trnap-ugg
trnag-ucc other downstream 1508528 18816259 ~ 18816330 (-) True trnag-ucc
TU34886 other downstream 1518108 18794032 ~ 18806750 (-) False LOC113537624
XR_004580158.1 other upstream 1135402 21463861 ~ 21531428 (-) False raver2
XR_004580163.1 other upstream 1135402 21463861 ~ 21531428 (-) False raver2
XR_004580160.1 other upstream 1135402 21463861 ~ 21531428 (-) False raver2
XR_004580156.1 other upstream 1135402 21463861 ~ 21531428 (-) False raver2
XR_004580159.1 other upstream 1135402 21463861 ~ 21531428 (-) False raver2

Expression Profile