RNA id: XM_026927218.2


Basic Information

Item Value
RNA id XM_026927218.2
length 1627
RNA type mRNA
GC content 0.46
exon number 9
gene id capza1a
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13177828 ~ 13189549 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCCCGTGATGCATTTTGACAGGGTTGGTCTAGCTGAGCCAAGATGGCGGACGTTGACGAACAGCTCACTGATGAGGAGAGGgtcCGCATTGCTGCCAATTTTGTCGTCCACGCGCCACCTGGAGAATTCAATGAAGTTTTCAATGATGTCCGGCTACTGCTCAACAATGACAATCTGCTCAGGGAAGGGGCGGCTCATGCCTTTGCCCAGTATAACATGGATCAGTTTACACCCACCAAACTTAAGGAAGATCAGGTGTTGATCACAGAGCATGGAGACCTGGGAAACGGGCGCTTCTTTGACCCGCGAACCAAGCTGTCGTTTAAGTTTGACCACCTGAAGAAAGAGGCCAGCGACCTGCAGCCCTACGAGGGTGAAGCAGCTCTGGAGCCATGGAGGGAGGCGTGTGATGCTGCACTCAGGGCCTACGTCAAAGATCACTACCCTAGTGGAGTGTGCACTGTTTATGGGAAAACCATTGATGGCCACCAAACAATCATTGCCTGCATTGAAGGACATCAGTTTCAACCCAAAAACTTCTGGAACGGTCGCTGTCGGTCTGAGTGGAAGTTCAGCTTGTCTCAGGGCGCGACACAGCTGGTGGGCGTGCTCAAGGTCCAGGTGCATTATTATGAAGATGGCAATGTGCAACTGGTCAGCCACAAGGACATTCAAGAGTCTATCACCATTTCTAACCCGAAGCAGACTGCTGAGGAGTTAGTTAAAGTTATTAACAATGCAGAGACTGAATACCAGACGGCAATCAACGAGAACTACCAGAACATGTCGGACACCACCTTCAAAGCCTTACGCCGACCACTTCCTGTCACCCGTACCAAGATTGACTGGAACAAGATCCTTAGCTATAAGATCGGCAAAGAGATGCAGAACGCTTAGAGCTGAGCCTGCATGCCTCCCCCTCTGCTCACAGTACAAGCCAAGAAGTGACCTGCGGGGGGCTGGGCTTGAGCTCGAGGCCAGGGCCAGGCTTGGGCACAGGCACATAGGACACATGTGCTAATTGTCcttgtttcctttttctttgttttttttttcctctcttttcttccaaAGGCCAAGGTTTAACCTCAGCTAAACAGACTGCCTCCTTTTCTGTATTGTCGGAAGGCTGTGAGATTGTTCTGTTGGGTGTAGCAATGGTCCTTGCTGTTGAACCAATACCTCCTGCAACACCAGTGCACAGGGTCAGAAATGTAATATTCCCACTTTTTCACGTTTTATCCCCCACCTCCCTGATTATTACGCATCACTCAGAGAGGGGTTTGTGGACACCGATTCAACTATGTCCTTGACCAAATGTTTCATCTCCActaatgaaaatgcttttttaaatatgctttgGAATAGAGTTTAACTTTATAAATTTTCTTCAAAGACATTGATTTTAATCTAGGattccaatgtttttttttttttttagcggaTGGAAACAAAGACTGAAGAGGTTCTTTGTATGAAGAAGGTTTAGGGTGATTACTGCTTAGgttactgcttttttttcttagaatacTTAGAATAGCCTTTATACATCTTAAATACCGTTTACACGAGCTGCTACCCTGATTTGGATTtacgagagaaaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0008290 F-actin capping protein complex cellular_component
GO:0030018 Z disc cellular_component
GO:0071203 WASH complex cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K10364 CAPZA; capping protein (actin filament) muscle Z-line, alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31421 lncRNA downstream 1669 13175077 ~ 13176159 (-) True G26613
TU31418 lncRNA downstream 8166 13169253 ~ 13169662 (-) True G26610
TU31379 lncRNA downstream 71742 13104457 ~ 13106086 (-) True G26585
TU31363 lncRNA downstream 107005 13070595 ~ 13070823 (-) True G26570
TU31148 lncRNA downstream 376595 12801007 ~ 12801233 (-) True G26387
TU31647 lncRNA upstream 303963 13493512 ~ 13495861 (-) False slc5a8l
TU31618 lncRNA upstream 320827 13510376 ~ 13568936 (-) True G26788
TU31828 lncRNA upstream 451615 13641164 ~ 13646894 (-) False fkbp11
TU31831 lncRNA upstream 457898 13647447 ~ 13694820 (-) False G26970
TU31830 lncRNA upstream 465923 13655472 ~ 13694820 (-) True G26970
XM_026927351.2 mRNA downstream 4158 13161489 ~ 13173670 (-) True st7l
XM_026916743.2 mRNA downstream 119061 13042395 ~ 13058767 (-) True slc2a1b
XM_034310885.1 mRNA downstream 195935 12949685 ~ 12981893 (-) False si:dkey-166d12.2
XM_026922711.2 mRNA upstream 25392 13214941 ~ 13231740 (-) True rhoca
XM_026926279.2 mRNA upstream 45387 13234936 ~ 13251911 (-) True ppm1j
XM_026926108.2 mRNA upstream 300645 13490194 ~ 13493259 (-) False si:ch211-105j21.9
XM_026926098.2 mRNA upstream 300645 13490194 ~ 13493259 (-) True si:ch211-105j21.9
XM_026921607.2 mRNA upstream 303963 13493512 ~ 13502170 (-) True slc5a8l
TU29342 other downstream 2687533 10489293 ~ 10490295 (-) True G24760
TU29080 other downstream 3309550 9863367 ~ 9868278 (-) False G24516
TU28828 other downstream 3458858 9715527 ~ 9718970 (-) False tnnt2b
TU28673 other downstream 3736018 9435563 ~ 9441810 (-) False tusc2a
TU28036 other downstream 4693714 8481051 ~ 8484114 (-) False tcta
XR_003403751.2 other upstream 49155 13238704 ~ 13238806 (-) True LOC113537313
TU31648 other upstream 309056 13498605 ~ 13499984 (-) False slc5a8l
TU31814 other upstream 442713 13632262 ~ 13634652 (-) False rps26l
XR_004579719.1 other upstream 684165 13873714 ~ 13907189 (-) False lhfpl4a
TU31994 other upstream 860852 14050401 ~ 14058445 (-) True G27107

Expression Profile