RNA id: XM_034300435.1


Basic Information

Item Value
RNA id XM_034300435.1
length 3500
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC113534431
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 14887465 ~ 15009183 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgtctgtgtgtgtgcgcgtgcattaACGCTCCAGCTGCTTAACATTAGTCATCCTCACGAGCTCGAACTGCACGCGACTCGGATCAGCGCGCCTCAGCGTCGGTTCGGTCGCGAGCGCATGCAGACGGAGtggaagaagaggagaaagacagggactgagagacagagagacacaaggAGAAAGACAGTCTTACACGGCTGTCTCAGCACCTCTGGGTTTGGACAGCGCAAcagcttttcttttaattgCCGACAGAAAAGATttccgtcttttttttttctacttgcAAAAATAACCCGCTCTGTGGACGGAGTTCGGTTCGGGGGAAGTCGACGATTGGGCAGGAAAGCAACAAATATCAACAGATACCCGGGTTAAGTTGTGAACTGAAAGCACAGAAGCCACGGACGgAAGTCACTCCAGAGGACAAAGCTCTATCTCTGGCCTAAAGGGAGACATTGAAAAACCTGACCTGAAGGAGATGAATATTTATGGACTATGAACAATGGAGTAAGAGACAGCGCCTTCTAGTAAAGCcaaatgtatttttcactttattgcATCTACCTTGATATATTGATCcagcaatgagctttaaaatgcttttacaCCCTTGAAAGGTGCCTCCATTGCTCACCTTCTTAACCAAGTAAAAAAACTCAGAAAGGTAGACAAGAGCTCGGCTGTTGCAATGTCTCCGCCCTTATTAAATGGAGTCAGATGGACCAGTTGTTATGGCTTATGTTCACTGCTTGTTCTTCTTAGTCTCTTTCTGACCACTTTGGTGGCAAAACCTAAAGGCCCAGGCCATACACATCTAAACTCCATTCGTATCGATGGAGACATCTCCCTGGGAGGCCTGTTCCCAGTGCATGCAAGGGGCCATGGTGGAAAGCCCTGTGGAGAACTGAAAAAGGAGAAGGGAATTCATCGTCTGGAGGCAATGCTTTTTGCTCTGGACCGCATCAACAATGACCATGACTTGCTTCCCAACATCACATTGGGGGCCCGAATTCTGGACACTTGTTCCCGAGATACACACGCTCTGGAGCAGTCACTAACTTTTGTCCAGGCACTTATAGAGAAGGATGGGATGGATGTGAAGTGTGCTGATGGTGGATCTCCCATCATCACAAAGCCAGAGAGAGTTGTGGGTGTCATTGGTGCTTCTTCTAGCTCAGTGTCCATCATGGTGGCTAATATCCTGCGTTTGTTTAAGATTCCCCAGGTGAGCTATGCATCTACAGCCCCAGAGCTGAGTGACAACACACGCTATGACTTCTTCTCTCGAGTTGTTCCTCCAGACAATTACCAGGCCCAGGCTATAGTGGACATAGTGCGCCACATGGGCTGGAACTATGTGGCCACTGTTGCCTCAGAAGGAAATTATGGAGAAAGTGGAGTGGATGCCTTTATCCAGAAGACCCGTGATGATGgaaatgtgtgtatatCACAGACAGTTAAAATCCCTCGTGAACCAAAGCCAGGAGAGTTCGACAAGATTATCCACACCCTTGGAGAAAATTCCAATGCCAGGGTGGTCATAATTTTTGCAAATGAAGATGATATAAGGCGACTCCTGCAGGCAGCAAAGAAAGCCAACCAAACAGGACATTTTATTTGGGTGGGATCAGACAGCTGGGGCTCTAAGATCTCTCCTGTGCTACACCAAGAGGAAATGGCGGAGGGAGCTATCACCATCCTACCCAAACGCCAGGCTATCAAAGGGTTTGATAATTATTTCATCGGGCGAACGTTGGAAAACAACAGGAGGAATGTCTGGTTTGCTGAATTCTGGGAGAATAATTTTAACTGCAAACTCAACCGCAATGCCTTGAAGAAAGGAACTGGCATTAAGAAATGCACAAATCAAGAGAGGATTGGGAAAGATTCAGCTTATGAGCAGGAGGGTAAAGTGATGTTTGTGATCAATGCTGTGTATGCCATGGCCCATGCCCTCCATAACATGCACAGAGACCTGTGTCCTGGAAAGGTGGGACTTTGCTCCAAAATGGACCCTATCGATGGAAGCCTCCTTCTTAAGTACATCCGCAAAGTCAATGTCACAGTCACAGCTGGCAATCCAGTGCAGTTCAATGAGAATGGAGATGCCCCAGGTCGTTACGATATCTTCCAGTACCAGATAAATAACAAAACCGCTGAGTACAAAATCATTGGCACCTGGATTGACAAGCTCAACCTTAACATCTCCATGATGCAGTGGCCGGGCGGTGTGCGGCAGGTGCCCTACTCCAACTGCAGCCAACCCTGCAAGCCAGGCTGGCGGAAAAAGATTGTGAAAGGCATTCGCTGCTGTTGGCACTGTGAGCGTTGTGAAGGCTACCAGTACCAAGCCGACCCATTCACTTGCAAGATGTGTCGCTTTGACCTTCGACCCAACAAGAACCACACAGGCTGCCAGCCCATCCCTATAATCAAGCTGGAATGGAGCTCACCCTGGGTGGTCATACCTGTTTTTCTTGCTATCCTGGGCATCATGGCTACACTATTTGTGGTGGTCACATTCATACGCTACAATGATACACCAATTGTTAAGGCATCAGGACGGGAGCTCAGCTATGTCTTGCTGACAGGCATTTTCCTTTGCTATGCTACCACTTTCCTGATGATTGCCACTCCTGATGTTgggatttgttcattcagaCGCATTTTCCTTGGACTTGGAATGAGTATAAGTTATGCTGCATTGCTTACTAAGACCAACCGCATTTACCGTATTTTTGAGCAAGGGAAGATGTCAGTGAGTGCCCCACGGTTCATTAGCCCAGCCTCCCAGTTGGTTATCACTTTCATCTTGATCTCACTCCAACTCTTGGGGGTGTGTATCTGGTTTGTGGTAGATCCTCCCCAGGCTTTTGTGGACTATGAAGACCAACGCATGTCAAACCCAGAGATGGCACGAGGTGTGCTTAAGTGTGATATCTCAGACTTGTCACTCATCTGCCTGCTGGGATACAGCATGCTGCTGATGGTCACATGCACAGTCTATGCCATTAAGACACGTGGGGTGCCTGAGACCTTCAACGAGGCAAAGCCTATTGGCTTTACCATGTACACCACCTGCATCATCTGGCTTGCATTTATCCCCATCTTCTTTGGCACGTCGCAATCAATGGAAAAGATGTACATCCAGACAACTACTCTTACCATCTCAGTCAGCCTGAGTGCTTCTGTGTCTCTGGGATTGCTCTACATGCCCAAAGTCTACGTGGTGCTCCTCCACCCTGAGCAGAATGTGGCTAAGCGCAGCACTCGTAGCCTGAAGGCTGTAGTCACTGCCGCCACAATGTCCAACAAATTCAACCCCAAGGCCAACCTCAGACCCAATGGAGAGGCCAAGACTGAGCTGTGTGAGAACCTGGAAACTCAAGGGCCATGCAGAAAGGGGCACATGGATCAAGATTTTAAAACACCATTTTACAGAATGACCTGCTGAAATATAGCAACCAGTATTCGAACACAGCATTACAAaccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32441 lncRNA downstream 5948 14884255 ~ 14884487 (-) True G27502
TU32421 lncRNA downstream 30189 14860005 ~ 14860246 (-) True G27484
TU32377 lncRNA downstream 99794 14790431 ~ 14790641 (-) True G27448
TU32201 lncRNA downstream 397596 14492637 ~ 14492839 (-) True G27303
TU32157 lncRNA downstream 436144 14444626 ~ 14454291 (-) True G27259
TU32551 lncRNA upstream 1142 15010325 ~ 15010661 (-) True G27600
TU32615 lncRNA upstream 55702 15064885 ~ 15065211 (-) True G27652
TU32663 lncRNA upstream 120820 15130003 ~ 15130260 (-) True G27699
TU32669 lncRNA upstream 135522 15144705 ~ 15146155 (-) True G27705
TU32670 lncRNA upstream 141629 15150812 ~ 15151049 (-) True G27706
XM_026922260.2 mRNA downstream 14445 14872949 ~ 14875990 (-) False pxmp4
XM_026922253.2 mRNA downstream 14445 14872949 ~ 14875990 (-) True pxmp4
XM_026923672.2 mRNA downstream 20732 14862967 ~ 14869703 (-) False tgm5l
XM_026929263.2 mRNA upstream 1644 15010827 ~ 15024533 (-) True LOC113535748
XM_026929270.2 mRNA upstream 1644 15010827 ~ 15016270 (-) False LOC113535748
XM_026929243.2 mRNA upstream 15944 15025127 ~ 15032562 (-) True zmynd10
XM_034313981.1 mRNA upstream 15944 15025127 ~ 15032501 (-) False zmynd10
XM_034313979.1 mRNA upstream 15944 15025127 ~ 15031645 (-) False zmynd10
XR_003403256.2 other downstream 14445 14872948 ~ 14875990 (-) False pxmp4
XR_003403257.2 other downstream 14445 14872949 ~ 14875990 (-) False pxmp4
trnae-cuc_5 other downstream 498084 14392280 ~ 14392351 (-) True trnae-cuc_5
TU31994 other downstream 831990 14050401 ~ 14058445 (-) True G27107
XR_004579719.1 other downstream 983246 13873714 ~ 13907189 (-) False lhfpl4a
TU32819 other upstream 288126 15297309 ~ 15299019 (-) True G27843
TU32916 other upstream 447452 15456635 ~ 15461001 (-) True G27925
TU32920 other upstream 452767 15461950 ~ 15469229 (-) False oxtr
TU34409 other upstream 2263772 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 2504529 17513712 ~ 17529315 (-) False si:dkey-44g17.6

Expression Profile