RNA id: XM_026927315.2


Basic Information

Item Value
RNA id XM_026927315.2
length 1852
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC113534471
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18615977 ~ 18623608 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGACGCGTGTCTGCAGGTGAAGGGCTCTAAATGCCCCCATTTGTCACCATTTTCCCAGAGATCCTTTCATCTTGATCCTCTCTCTGCTGCCTCACTAATGGACGTCCAACAGTGATTGCAGGAGTGTGAGCAGGCACCATGGCGGTGACGATGTGCCAGGTGATGGGCTTTGTGCTGGGCCTTTTGGGGCTGGGGGGCATCATTGCTTCTACAGCCATGGACATGTGGAGTACGGAGGACCTGTACGACAACCCCGTCACATCCGTCTACAGCTATGCGGGCCTGTGGAGGTCGTGTGTAAGACAAAGCTCGGGATTCACCGAGTGCAGACCCTATTTCACCATCCTGGGACTCCCAGGCCTATTCCAAGGTGTGAGAGCGCTCATGATTGTGGCCATCGTTCTCGGAGTTATCGGAGTCCTCATTGCCATTTTTGCCCTTAAGTGCCTCAGAATGGGCAACATGGAGGACCGTGTGAAAGCAACCATGACTCTGACTTCAGGGGTCATGTTTGTTATTGCTGGGATCTGTAGCATTGCTGGGGTTTCCATCTTTGCGAATTTGATCGTGACCAACTTTGCGCTCACTACCTATACCTCACCAAATGGGTTGGGTCTAGTTGGCTCTGGCCTTGTTGGGTCACCTCTTACTCCGAGATACACGTTCGGCTCGGCCCTGTTCGTTGGTTGGGTCGGTGGAGGTGTTCTGTTTATTGGTGGAATATTGCTGTGTTTGGCCTGTCGTGGACTGATGCCTGAGAAACGCTATGAAGGAACGGCGTACAAACCTGCAACCCAGAGTGGCATCTACAGGTCAGAAGGCTATCCCAAGACTTACAACAGCTCCTACAAGGCTCACAGTATTGACGGCAGACAATCCAACCAAAGATTTGACTATGTATGAAACTTGCTAATGGGCATGCAGGATAGATGACCATGGGATATTAATACTACCAGTGTAAAGTAGCAACACAGAAAAGAAGCAACACAGTGACCTAGCAATATGCGTGTAACATTAATACCATAGTAGTAGCCCATAATAATTCTTTAACAGAGGAGTATTTATAAAACACCCATAACGATCGAATAGAGCTTGTGATAGAGTCAAAACTCTGGTAGAGAGAAACATTTTGGACTTGTAGACTGAAGTCTACTCAATATCCAGATCTAAACAGATAACCCCTTTTTATACGGAGTGCAAGCGGTGTTATTTCAGGTATTTTCTACTGTTATTCATTCTGGTTGTGCTTCTGGGTTACTACTTATTTTTCAAGCCTGTTTTTTGTaggtttcattttattttatgttatgtcagttatttttatttttaaatttcagtgaGTTTTAATCTAGCCAATGCTTTTTGACAGCTATTAATCATGTAACATGTAGCTACACATATACTGGACTATGCTCTTAGAACTCTACAAGAGTGCGTTGCATCTTGATATTTGTTTTAGGacttttatgtttaatatgttttcttttgtgCTTATCAGCTGAGAGACTGAGAGTTTTGTACTCAGTTTACAAAAGTGCGTTGTTTAAAATGTCCAAACATTACGGCTTCTTAACATGTatggtttatttctgttttgatgTTCTTGGTTATACAATATTGTATTGTTGTTCTAAGTTTATTGGCCCACATGTAACCGTTTATCTAAGGcttttcagaatttcagttttggGCCAATTGTGTCCTTGGTTCATATCATGGTTGAGATACTTCTGTGCTTTGGCATCCAGAATAGGATTATCTTATTTCCATCATCATTATGTGCTGATGTGTGGGCCAGctcttttcttatttaacatttgagCGTTTAATATCTGCTATCTTATTTACTATG

Function

GO: NA

KEGG:

id description
K06087 CLDN; claudin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34830 lncRNA downstream 103 18614869 ~ 18615874 (-) True G29542
TU34829 lncRNA downstream 1253 18614357 ~ 18614724 (-) True G29541
TU34718 lncRNA downstream 163001 18452468 ~ 18452976 (-) True G29439
TU34596 lncRNA downstream 467228 18148228 ~ 18148749 (-) False zgc:153916
TU34503 lncRNA downstream 773157 17784475 ~ 17842820 (-) False G29237
TU34839 lncRNA upstream 10470 18634078 ~ 18634357 (-) True G29551
XR_004579394.1 lncRNA upstream 170417 18794025 ~ 18816812 (-) True LOC113537624
XR_004579395.1 lncRNA upstream 170417 18794025 ~ 18807890 (-) False LOC113537624
XR_003403788.2 lncRNA upstream 170417 18794025 ~ 18806448 (-) False LOC113537624
XR_004579393.1 lncRNA upstream 170417 18794025 ~ 18806416 (-) False LOC113537624
XM_026916472.2 mRNA downstream 29751 18502917 ~ 18586226 (-) False hs2st1b
XM_026916382.2 mRNA downstream 30215 18501538 ~ 18585762 (-) True hs2st1b
XM_026920882.2 mRNA downstream 151406 18449257 ~ 18464571 (-) False lmo4b
XM_026920872.2 mRNA downstream 151406 18449257 ~ 18464571 (-) True lmo4b
XM_026917991.2 mRNA downstream 420349 18148285 ~ 18195628 (-) True zgc:153916
XM_026912723.2 mRNA upstream 64990 18688598 ~ 18691082 (-) True sox14
XM_034312132.1 mRNA upstream 196449 18820057 ~ 18835789 (-) True hdlbpa
XM_026927091.2 mRNA upstream 293017 18916625 ~ 18927201 (-) True stk25a
XM_026916714.2 mRNA upstream 334165 18957773 ~ 18961671 (-) True dtymk
XM_034310739.1 mRNA upstream 340683 18964291 ~ 18969451 (-) True agxta
trnae-cuc_6 other downstream 38682 18577224 ~ 18577295 (-) True trnae-cuc_6
TU34546 other downstream 543068 18070987 ~ 18072909 (-) True G29279
TU34529 other downstream 666259 17949157 ~ 17949718 (-) True G29263
XR_004577384.1 other downstream 1086662 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34409 other downstream 1335804 17272955 ~ 17280173 (-) True G29158
TU34886 other upstream 170424 18794032 ~ 18806750 (-) False LOC113537624
trnag-ucc other upstream 192651 18816259 ~ 18816330 (-) True trnag-ucc
trnap-ugg other upstream 193519 18817127 ~ 18817198 (-) True trnap-ugg
trnap-ugg_1 other upstream 756833 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-cgg_1 other upstream 762834 19386442 ~ 19386513 (-) True trnap-cgg_1

Expression Profile