RNA id: XM_034299674.1


Basic Information

Item Value
RNA id XM_034299674.1
length 2238
RNA type mRNA
GC content 0.42
exon number 4
gene id hyal1
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9410354 ~ 9426556 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAGGGCTGGACCTTGTCTGAACATGCCAGAGCCAGACCTCGCCTACAGGAGGAGAAACAACAGCAGAAATGAACAATGAAGGAACGAGTGCTAGTGCAAACATCAAAGGTATGGGCACCATTGCACACTGGACATGTCGTCTCGCCtttctctgcatttttttaacatctccCATCATGGTCCATCCACATAAGTTGCTATCTCAGGTTCCATTCTTCACAGTTTGGAATGCTCCTACTGAAAAATGTGCAACTCGCTATGGTGTTGATCTAGACTTGAGCGTTTTTGATATCGTCCACAACCTGAACCAGAGCTTTATCGGGAGTAACATCACCATCTTCTACTCGGACAAGCTGGGCTTCTATCCTCACTACACTGAGAAAAATGAATCTGTGTATGGAGGTGTCCCACAGAACTTCAGCCTGCATGATCACCTCTCGCAAGCCTATAAAGATCTGCAAAACAGCATGCCAGATAAAGACTTTAGTGGCCTGGCTGTAGTGGACTGGGAGAGCTGGAGACCATTGTGGGAGCGCAACTGGAACAGAAAGGAGGTGTACCAGCAAGGCTCTAGAGCACTGGTGAGGGCTAAACACCCTGACTGGAAACCAGAACAAATAGAAGCCCAGGCCAAGAAAGACTTTGAAGGTGCAGCACAGGCCTTCATGGAGCAAACGATAAAGCTCGGACGAGTTGAACGACCATGGGGGCTGTGGGGTTTCTATGGCTTTCCCTGCTGCTACAATTaccagtataaaaaaaatgagacataCACAGGGGAGTGTCCACCGCTAGATGTGAAGAGGAACAACAAGTTATCTTGGATGTGGAATGTAAGCACTGCTCTGtatcctgatatttacatggATCTGAGCCTTAAGGGTCATGACAGAGACATTCTACTGTATGTCCAACATCGAATTATGGAGGGCATGAGGGTGAGAGAGCAAGTCTCCCCTAATCAACCAGTTGTCATCCCCTATGCCCGTATCGTCTATACCTACTCGATGACATTCCTCTCACAGgagGATCTGGTTCATACCATTGGAGAGAGTGTCGCATTAGGGGCAGCAGGAGTTGTGCTATGGGGAGATGCCAGCTACGCCAGAAGCGAGAGCACATGTCTAGCAGTGAAAAATTACCTGGATGAGACTCTGGGCAAATATGTGGTAAACGTGACTAAAGCGGCGTTTCTCTGTAGCAAGGAACTGTGTTCGTTTAATGGCCGATGTGTGCGGAGAGACCCAGGATCTTCAGCCTATCTTCATCTTGACCCAGCAAAATGGACCATCATCCCCAGAGCTGAGCTTCCTGACCTGAACACCAACAGTCCTTCATATGTGATACAAATGAACAATAAGGAGGGGAGGTATCATTTTACAAAACCATTTAAGTGCCAGTGTTATCCAGGCTGGGAGGGCGAACACTGTGAGAAACAGGTTGCTCCTAAGCCTAGACAGAGAAAACAAATGTCTatagatctttaaaaaaaaacctaggaCTGGAAGAATTGTAGCCTGAGCAGTCAGTGCTGGCAAATCCTGTACAGACAGACACTCTGTCCAACTTACAGTAAAATTTCAAAtatcacaaaatgaaaaacatatattAGAATGACCATAACAATTTAATGCTAAAATGAACTTTAACTCACTCGAACTTAACAGACATTAACAGGTATTTATAATCAACTTATTCAATATTTGAATTACTTTAAAGTGCATGTCTAAACACTGGTGTAATACATTTTTGAGAATGCTGCTATTTTAAACCTTTAATCAAGTAAGTTTGTGCAAATTATTTATAAGGTCTAgattataaacaattaaaacaatacATTGTCTTTTGTGGACTACAACTATTGTCTTTTTGTGTGCAATACAGCATTTATGAATGTGGCCctcttgtgtatatatatggtACAATTTTAAACTTTAGGATACaattctataaataaagtttgcaTTTTCAATACCAGTATTGGAATTATTTCAGAATGAACAGTATTACTTGTCTGTTGTTGATATTTATGTATAGAATGTATAACATAGTGAAGGTTAGACCACCCTCTTCTGGGATTTTCTTGTACTACAACTGCAAAACACGTCTGAGTCTATAGTCCTGGCTTGCCACTAGATAGCAGTAAAGGCACATCGAAACAGTTTGTATAGACAGTCGCATGTACATTTCTTGCTGTAtctatgtactatatatatatatatatatatatatatata

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28667 lncRNA downstream 51 9409908 ~ 9410303 (-) True G24185
XR_003402903.1 lncRNA downstream 75027 9334668 ~ 9335327 (-) True LOC113527743
TU28543 lncRNA downstream 79526 9330480 ~ 9330828 (-) True G24087
TU28529 lncRNA downstream 123699 9279922 ~ 9286655 (-) True G24073
TU28447 lncRNA downstream 339585 9070406 ~ 9070769 (-) True G23991
XR_004577036.1 lncRNA upstream 172629 9594496 ~ 9596485 (-) True LOC113532565
XR_003403357.2 lncRNA upstream 172662 9594529 ~ 9596485 (-) False LOC113532565
XR_004577037.1 lncRNA upstream 172667 9594534 ~ 9596485 (-) False LOC113532565
TU28740 lncRNA upstream 190513 9612380 ~ 9612649 (-) False LOC113532571
XR_003403358.2 lncRNA upstream 190523 9612390 ~ 9615583 (-) True LOC113532571
XM_034300325.1 mRNA downstream 91679 9098091 ~ 9318675 (-) False cacna2d2a
XM_034300328.1 mRNA downstream 91679 9098091 ~ 9318675 (-) False cacna2d2a
XM_034300323.1 mRNA downstream 91679 9098091 ~ 9318675 (-) True cacna2d2a
XM_026932599.2 mRNA downstream 322327 9074912 ~ 9088027 (-) False mst1
XM_026932517.2 mRNA downstream 322327 9074912 ~ 9088027 (-) False mst1
XM_026935683.2 mRNA upstream 7249 9429116 ~ 9432597 (-) True hyal2a
XM_026937121.2 mRNA upstream 13639 9435506 ~ 9441845 (-) False tusc2a
XM_034310483.1 mRNA upstream 13639 9435506 ~ 9441820 (-) False tusc2a
XM_026937191.2 mRNA upstream 13639 9435506 ~ 9440560 (-) True tusc2a
XM_026932014.2 mRNA upstream 46673 9468540 ~ 9471356 (-) True rps10
TU28035 other downstream 926173 8481051 ~ 8484181 (-) False tcta
TU28036 other downstream 926240 8481051 ~ 8484114 (-) False tcta
TU28034 other downstream 926325 8481051 ~ 8484029 (-) False tcta
XR_004580309.1 other downstream 1145125 8262619 ~ 8265229 (-) False mitfa
TU26888 other downstream 2930343 6479402 ~ 6480011 (-) True G22591
TU28673 other upstream 13696 9435563 ~ 9441810 (-) False tusc2a
TU28828 other upstream 293660 9715527 ~ 9718970 (-) False tnnt2b
TU29080 other upstream 441500 9863367 ~ 9868278 (-) False G24516
TU29342 other upstream 1067426 10489293 ~ 10490295 (-) True G24760
XR_003403751.2 other upstream 3816837 13238704 ~ 13238806 (-) True LOC113537313

Expression Profile