RNA id: XM_026928839.2


Basic Information

Item Value
RNA id XM_026928839.2
length 2694
RNA type mRNA
GC content 0.41
exon number 8
gene id iho1
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16288171 ~ 16299906 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCCACACAGTTCAGTCAGCTGGGGTCGCGTGCGCACAGGGCGCTCACTTCAAGTTACTTCAGGTGTCGCAGACCCTCACAAGCTGCTGCCATTAAACAGCGGTTGTtttacacacaccctgactGAGTTTTCAGAACAGTCTAATGGTATTGTGTGGCCAGATACTGAATTAGTAAGCACGGGAGTAATTGTACAGGAACACAGAAGCATGAAGCCTAACATTTGGAATGTAAAGGATATTTTGAGTATTCCAGTGAACTCTGTGGGTGCAAAACCAGGTAAGGGAGGTGCCACCTGTGACTACTCCAGCCTGCCTGACTCCCAGTTTCTGTTCGGATCTCAAACCTGGCCTGAAAATTCTCAAAGCTTTTCCCAGGAGATAAGTGGACAGTCCAGAGGCTCTCAACAGGCCTCACAGGAGATAAATGAAACGAAGGTGTCAACCAGCTATCACTCCAAGCCTATGCTGTTTGGTGATAGCAAAGTAACCAACATTTCAGGTGGTAGAGCCATGGGTATATTAGACAGATttgaagaggagaagagaaaagccAAAGAGATTGAAATTCTCATTGGAGTCCGGCAGTTGCAAGAAAGTCTGgaaaatATCAAAAAGACTTTTCTAAACTGCATTGATGGAAGTTGTGACATAACCAGAGCAGCTGTGGCTGAAGGAATGGATAATTTTAGAAAGACAATTCAGGATAATTTTGCCACCATAAAGGAGAACATAGCAAGTCAGACTGAACTGCTGATGAACCAGATGCATAGAGAGATGGAAGACAATGAGGTGAAGATGTCATTAGCTCTAAAAGACTTGAGCTCAATTGTGCTCAGCCTCCAGCGGGATTTGGAATCACTGAAACTGGAACAAAGCAAGGAGCAGAGTCTGCTTGGAGAGATTATGTCTCTGCTTGGCACAATAATGACTGCTCACTCCACTGGAGCTCATCCCAGCCCTGTCCGAATGATTGACAACACTGTTCAGACATCACCTGGTTTGGTAGCGCAGTTCTGTGTCGTTTCGGAAGAAAAGCGTTATTATGAAGGCATGAAGCTGTGCAGTGAAGCCTTTAATTACTCAGAGGAAAGAGTAGACCAGAGCATTTGtcctgttaaaaaaacatctccAGAGAAACTTAGCAGAAGAGCGTCTTTCCGGGTCATAGGCACTCATCCTTTTGAGAAGCAGCGGCACACAGGAACTGAGAGGTTTGACCCTAATGGCTGGCAAAAGTCTTACCATCTGCGCTCAGTTACAACCAGTTCTCCAAGCCCAGTGGCTACTAGCGCTGTCACTGCTCTTGTACAGGATTCTAAGAAGAATTGCGTTGTTGGAGGCCCTGTGCATATAGAGCCAGTAAAGTCtttgaataatatgaataagAACAAGTCAGCAGCTTGGATTGAGGTGCCAATAGAGAGAAAAGTGCCTAAGAGAGCACAGAGATGCCAGACCTTCAGGAAAAAGAAGAGAGCCTTGATTCTGCCACAGAGACGCCCTAATCAAGGGATGGCTTTGAATAATGTGTCTGAGGATAGTCAACGCGATGAAGACCAGGAAAACAGGGTGCCTCAATCAGAGGTCAGTGCCTACCAGAAAACCAGCAAAGCTGTTTCAGGGAACCATCTACCACTGCAGCAGCAAAGCACAACTAAACTGATGAATATGAGTGAATGTGGACAGCATCTGGATCATTGGTCATGGTCCCAGAGCAGTAACAGCTCACAGGTGATTGTGGAATACCAGGAAGCTGAATGGGAAACGGTGAAGCCTGAGCAAAAAGCCAATActatacagagacagagaggtgtCTGGCAGCTCTTTGACTTCATCAGTGACTCTGATTAATGCGCTGTGAGTTACATGAGTAACATTTTAAGACACAAAGCAAAACTTTTTACTAGGACTTAGTTCAGAATGTTTTCGTTGTTTTTCTGTAAAACTCTGGCAAAGTTTCAGTTCTTTGTAGTTCCACAGTACATTTCTTCTGCTTCCCATGGACACTCAGTCATGTTTACTGTTGCCTTACATAATAGCAAAAATTTACATCTTTCAATCTTATACgtgatgattttaaaataagtttataTATTTGCTATTTAGAATTTCTGTTGTCCTTATTTTTTTGTACTCCCTGTGTACTCAGGAACTTATTTCCTACATgattttccaaatattttggATTCTGTTGGTAGTCAATCAATATTAGAGCTCAGGtcaaagtgggggaaaaatctTTGTTTTGTATTGCTATGGTAGCACAAACATGGCTACAGTAATATTTAGATAAGTCACAGTGTCAGATGTGCAACAGAACATACAGTGCATAAactattgttaaaaaaacatctctgtAATGCAGCTGAAGAATTAATTCATACAGCATGCTTATATTTAATGCAGCTGAAGAACTCATTAATAGAGCatgctaatatttaaaaaatacacctTAATGTTAGCTTCTTGAAACAGGAGTAAATGTTGTGAGCTTCTCTGTAATCTGTTACATTCACACATCAAAAACAGTTGTATACCTAAAAAAACTAACAATTATCTGTTCGAAAATGCAGTTGACAATAGACCATCAGTCTATGATcagtataagaagaataaatcaaCACTAATATTGTACcaaaacatttcacatgtaTGCAAATCAGCCTTaagtgaataaaacacaaactctGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33473 lncRNA downstream 21416 16266556 ~ 16266755 (-) True G28385
TU33472 lncRNA downstream 23011 16264924 ~ 16265160 (-) True G28384
TU33471 lncRNA downstream 23929 16263614 ~ 16264242 (-) True G28383
TU33463 lncRNA downstream 27859 16259436 ~ 16260312 (-) True G28375
TU33464 lncRNA downstream 29008 16258858 ~ 16259163 (-) True G28376
TU33633 lncRNA upstream 33095 16329108 ~ 16329421 (-) True G28515
TU33626 lncRNA upstream 62126 16358139 ~ 16359521 (-) True G28508
TU33656 lncRNA upstream 166089 16462102 ~ 16463933 (-) True G28537
TU33657 lncRNA upstream 166089 16462102 ~ 16489915 (-) False G28537
TU33936 lncRNA upstream 274777 16570790 ~ 16571524 (-) True G28779
XM_034299722.1 mRNA downstream 6410 16271868 ~ 16281761 (-) True slc26a6l
XM_026927104.2 mRNA downstream 62971 16221165 ~ 16225200 (-) True si:ch211-157b11.8
XM_034311370.1 mRNA downstream 78209 16202388 ~ 16209962 (-) False gata2b
XM_026917189.2 mRNA downstream 78209 16202388 ~ 16209962 (-) True gata2b
XM_026922252.2 mRNA downstream 100291 16182517 ~ 16187880 (-) True ruvbl1
XM_034300908.1 mRNA upstream 31858 16327871 ~ 16346280 (-) False rereb
XM_026915484.2 mRNA upstream 31858 16327871 ~ 16346278 (-) True rereb
XM_026921515.2 mRNA upstream 50572 16346585 ~ 16354141 (-) True eno1b
XM_026921526.2 mRNA upstream 50572 16346585 ~ 16353571 (-) False eno1b
XM_026912883.2 mRNA upstream 76769 16372782 ~ 16386220 (-) True frs3
TU32920 other downstream 818942 15461950 ~ 15469229 (-) False oxtr
TU32916 other downstream 827170 15456635 ~ 15461001 (-) True G27925
TU32819 other downstream 989152 15297309 ~ 15299019 (-) True G27843
XR_003403256.2 other downstream 1412181 14872948 ~ 14875990 (-) False pxmp4
TU34409 other upstream 976942 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 1217699 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34529 other upstream 1653144 17949157 ~ 17949718 (-) True G29263
TU34546 other upstream 1774974 18070987 ~ 18072909 (-) True G29279
trnae-cuc_6 other upstream 2281211 18577224 ~ 18577295 (-) True trnae-cuc_6

Expression Profile