RNA id: XM_034313981.1


Basic Information

Item Value
RNA id XM_034313981.1
length 1822
RNA type mRNA
GC content 0.45
exon number 11
gene id zmynd10
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15025127 ~ 15032562 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCGGCTAGCTGGAGTAAGTAGATTTGTTCTGTGTGGTAGAAATAAAAGTAGACCCATAAACTAGCTTATTAGTTTCCTCTGTTCCCCTTCGCGAATCATTAGTCATTAAGCAGCAGTGATGGACTCTCTGCTTCTGCACGGAGAGGCTGAAGGTTACATCCAGGGTTTGGAAAGAGTAGCACTGCGCGACGTTGGGAGTCCCAGATTCCCATGCTGGTTCATGGATTGATACTTGTTGAAGTTTGGAAGCAGAAAGTGTTCCCTATCCTCTGCAAGCTTCAGGACTTCAGCCCAAAGAGCACCTTTCCACTGTACATGGTGATTCACCATGAAGCTACAATCATAAATCTGTTGGAGACGATCTTATACCATAAAGAATCATGTGAGGCAGCAGAGGATACTGTTGTGGACCTTGTCGATTATTGCCATCGTAAACTGACTCTGCTGGCAGGGCGCTGTGCCCGGGGGGAACTCCCCACTGAAGACAGAACCTCACACACAGAGGTCTCAAACATGAACTCTGTACAGAATCTGCAAAACCAGAGCACAATTTTAGAATTTGAGATCTCTCTCAAGGCTCTGTCTGTGCTACGCTACATTACGGATCATGTAGAAAGTTTGAGTTTGAGTGTTCTCACGAGGATGCTGAATACTCATAACTTGCCCTGTGTGCTGGTTCAACTTGTAGAGCATTGTCCCTGGAGCCGTAGTTCTGGAGGTAATCTGCAGAAGTACGAGGGTGGGAAGTGGAGAGAGATCCCTGCAGAGGACAGGCtaaaaatgaccaaactggAAGGGCAGGTGTGGATTGCTTTGCTGAATCTACTGCTTAAACCAGACTGCCAGAGGAAATATGATTTCAACAACTTCAACAAAAACCAGCTCTTAAAGCTGCGTGGATTTTTGACAGAGGTTGTTATCGATCAGCTGCCAAATCTTGCTGATCTTCAGCGTTTCCTCAGCCACTTAGCTGTTACAGACCCTGCACCTCCAAAAAAAGACCTTATCCTTGAGCAGCTACCAGAGATCTGGAATGAGATTGTTGCGGagaattctgggaaatggaaGGCCATAGCTAAACACCAAGTGAAGAAGGTGTTCAACCCATCTGAGAGTGAGCTGAGAGAACAGGCAAACAGGCTGGCTGAGACTTATAATCTTGATGTGATGGAGTATCTCATCCCAGATAAACCGAAGTGTGGTGCGTGTGGAGCAGTGGGGGCCAAGCGTTGCTCCCGCTGCCAGGGAGAGTGGTACTGCAACAGAGAATGCCAGGTGAAGCATTGGCCCAAGCACAAACTTGCGTGCCAAATGATTGCAGAAGCCTCAGAGAAACTCCAGAAAGAGCTGAACATCAAGACCTGAGGGACTCCACCACGTACTGACAGGAAAGAGGCAGAGACTTCATTTTCAGTCTTACAGAGATCAGAGGAACAAAATGACTATAAATGCCATTGTCTGAATGACCTGTGTATAGCAACAAACACCAGCTTGGCTTGCTGTGGTTTTGATGGGAATTGAGGAAGAGTTCACTGTTTTATTGTAGTGGACTGAGCCTGTGTGTGACTGCATGCACTGCAGGAACTTAAATTGAACTTTTTGAACTACCGagaatttttgaaaattaaaaagaaattataggTATGACCgccattttgtgttttgtttgtatgtaaCTGTTTTAGAAGATTTTGACAGTTAAAAGTCTGTTTTGAGTTTTCTGAGCATATTGCTTCAATGTGAATGTAGCCATATTACAGTTTCATGCATAGCTctttgctcacacacacacacacacaactgaactgaattgagagagat

Function

GO:

id name namespace
GO:0044458 motile cilium assembly biological_process
GO:0036158 outer dynein arm assembly biological_process
GO:0036159 inner dynein arm assembly biological_process
GO:0034451 centriolar satellite cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32551 lncRNA downstream 14466 15010325 ~ 15010661 (-) True G27600
TU32441 lncRNA downstream 140640 14884255 ~ 14884487 (-) True G27502
TU32421 lncRNA downstream 164881 14860005 ~ 14860246 (-) True G27484
TU32377 lncRNA downstream 234486 14790431 ~ 14790641 (-) True G27448
TU32201 lncRNA downstream 532288 14492637 ~ 14492839 (-) True G27303
TU32615 lncRNA upstream 32384 15064885 ~ 15065211 (-) True G27652
TU32663 lncRNA upstream 97502 15130003 ~ 15130260 (-) True G27699
TU32669 lncRNA upstream 112204 15144705 ~ 15146155 (-) True G27705
TU32670 lncRNA upstream 118311 15150812 ~ 15151049 (-) True G27706
TU32777 lncRNA upstream 211814 15244315 ~ 15246353 (-) True G27801
XM_026929263.2 mRNA downstream 594 15010827 ~ 15024533 (-) True LOC113535748
XM_026929270.2 mRNA downstream 8857 15010827 ~ 15016270 (-) False LOC113535748
XM_026927231.2 mRNA downstream 15944 14887465 ~ 15009183 (-) True LOC113534431
XM_034300435.1 mRNA downstream 15944 14890435 ~ 15009183 (-) False LOC113534431
XM_034300444.1 mRNA downstream 51076 14890435 ~ 14974051 (-) False LOC113534431
XM_026929254.2 mRNA upstream 945 15033446 ~ 15039603 (-) True nprl2
XM_026917581.2 mRNA upstream 244404 15276905 ~ 15278713 (-) True gpx1b
XM_034314036.1 mRNA upstream 429572 15462073 ~ 15495209 (-) True oxtr
XM_026919181.2 mRNA upstream 429572 15462073 ~ 15470172 (-) False oxtr
XM_026919171.2 mRNA upstream 429572 15462073 ~ 15470159 (-) False oxtr
XR_003403256.2 other downstream 149137 14872948 ~ 14875990 (-) False pxmp4
XR_003403257.2 other downstream 149137 14872949 ~ 14875990 (-) False pxmp4
trnae-cuc_5 other downstream 632776 14392280 ~ 14392351 (-) True trnae-cuc_5
TU31994 other downstream 966682 14050401 ~ 14058445 (-) True G27107
XR_004579719.1 other downstream 1117938 13873714 ~ 13907189 (-) False lhfpl4a
TU32819 other upstream 264808 15297309 ~ 15299019 (-) True G27843
TU32916 other upstream 424134 15456635 ~ 15461001 (-) True G27925
TU32920 other upstream 429449 15461950 ~ 15469229 (-) False oxtr
TU34409 other upstream 2240454 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 2481211 17513712 ~ 17529315 (-) False si:dkey-44g17.6

Expression Profile