RNA id: XM_026929270.2


Basic Information

Item Value
RNA id XM_026929270.2
length 2079
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC113535748
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15010827 ~ 15024533 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGTCGAGTTGGAACTTCCTGTGTAGAGCCAATCACGGCGCGCTTTGGCTTGGGTTGTATATTTTCCAATTTTAACGTCCAGGGCGGAGCGTTTCCGGTTTAAGTCCAGAGCAACGTGGGCTAATACTTCATCAACGCCGCATACATCGAGACAGTTAGCAGATTTTCGAAGCAAGATCTACAGTTTTTAGTATTTATACTGTTAATCTGGTTAGAAAACGACTCGGTTTAAGTAGAAGTCATTCCTAAGTGAATAACGGTTTATTAGCAACTTTTAACAACTCGCAAACTTTTTTTTCGCGATGAGTGGAGTTAGTTGTAGCGACCAGACTCCGTCTTTTGAGAAGACCTGGGGCAGCTCGGCGAGCAGCGGGTACTGCAGTGAGGAGGACTCCAACTCCCACTCAGACTCCGACTCCGAGCTCGAGCAGTATTTCACCGCGCGCACTTCCTTCTTTCCCAAAGCCCAGAAAGACAAGGATGAGGTGACTGAGAGCAAGAAACAAGAGCTGTCCCATTCAGAGATTCAGCAGAAGATAAAGGAGTATAATGCTCAGATAAACAGCAACCTCTTCATGTCTTTGAACAAAGATGGCACCTACAACGGTTTCATCAAAGTTCATCTGAAGCTGGTACGGCCTGTGTCTGTTCCTCCTCCACGGAAGGGTGCTACGTCTCAGGAGCCAGCCAATGGGAAGAGAGGGGGAGCAGTAAAAAGGCGCACGTCCTTCTACCTCCCAAAGGACACTGCCAAACATCTGCACATCAGCTCTCGAACTCGTGCACAGGAAGTGATTCAGGCCCTTCTCAAGAAATTCACAGTGATCGACAATCCTGCGAAGTTTGCACTGTTTGAGCGCACTGAGCGCCATGACCAAGtgtaCCTACGGAAGCTGCCTGATGATGAGTGTCCACTGTTCCTGCGTTTATGTGCTGGGCCGAATGAGAAGGTGCTGAGTCTGGTACTAAAGGAGAATGAGACGGGAGAGGTCAATTGGGATGCATTTTCTTTGCCGGAGCTGCACAATTTCCTGCGCATTCTGAAGCGAGAGGAAGAGGAGCATGTAAAGCAGATCATGCAGCGTTATGCAGTGGCTCGTGATCGCATTCAACAAGCTCTGGTCAGCACCAACCCTGGCTGATCACTTCACAGAGCCTGTCATACTGACGAGTGGTCACAAGGGGGCCTCAGTCTATGAGGGAAGTCGACCGATCTACCGATCCATATGGACTAGCATCAGTGCGAttagtgtgagagagagagagagagtgcgaaCGAGTGTGGAAATGCAAGTGCGCAACCAGATGTGCGTGCGTGGAGAGAATGAGTCGTGACTGAGAGCGAGCGAAAGCATACTGGGGAATGGACGAGTGAAAATAGAACACCTTGTCGTGAATGGTGTGTGATTTGTTCGAGTGAGTGTAGAGAGTCCTCAAGATAGAACATCGTGTTTCTATGGAGACTACACAGGACTCTCCTGACTTCACTGCTGGTGaagttttaaatttacttttcttttcttccttctgtaGGCTATGAGACTatggagttttctttttttcttatccaTGTAATTGAACAACCTAGTTGTAGTAAATCCATGTGACTTGACTTGCTGTGcaatgttgaaaatgtctcACAACTCATCCATTTGACTTCTTTAGTACTACTGAGTGGTGAGGAATACCGGGGAATTCCCAATTATTCAGTTGACCTGATAAAGCCCCTTAGATGAGTGGTGAAATATCTTCAGCATTAAAGCAACAAGACCAGTTGCCTTAACTTACGACTCCTAGACTGTTTTTGCTTGGATGACTTGCATTCATTTCCAGACTTCTCTTGGAACACTGTGCTCAAataaattgggggaaaaaaggttcttGACCatgttttgattattattgCCATTCTTGTTGCCTACTTAATAAATCTGttctgtaattttatatatccTTTATATGTATGTTCTGTCAGTCACCtttttttgttagcaaaatATTCAAGCTTGACCTTGTGCAGTCACTTCAGTTTCTggaaactttctttttttccccccacaataAATGATTTCCTTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32551 lncRNA downstream 166 15010325 ~ 15010661 (-) True G27600
TU32441 lncRNA downstream 126340 14884255 ~ 14884487 (-) True G27502
TU32421 lncRNA downstream 150581 14860005 ~ 14860246 (-) True G27484
TU32377 lncRNA downstream 220186 14790431 ~ 14790641 (-) True G27448
TU32201 lncRNA downstream 517988 14492637 ~ 14492839 (-) True G27303
TU32615 lncRNA upstream 48615 15064885 ~ 15065211 (-) True G27652
TU32663 lncRNA upstream 113733 15130003 ~ 15130260 (-) True G27699
TU32669 lncRNA upstream 128435 15144705 ~ 15146155 (-) True G27705
TU32670 lncRNA upstream 134542 15150812 ~ 15151049 (-) True G27706
TU32777 lncRNA upstream 228045 15244315 ~ 15246353 (-) True G27801
XM_026927231.2 mRNA downstream 1644 14887465 ~ 15009183 (-) True LOC113534431
XM_034300435.1 mRNA downstream 1644 14890435 ~ 15009183 (-) False LOC113534431
XM_034300444.1 mRNA downstream 36776 14890435 ~ 14974051 (-) False LOC113534431
XM_026922260.2 mRNA downstream 134837 14872949 ~ 14875990 (-) False pxmp4
XM_026922253.2 mRNA downstream 134837 14872949 ~ 14875990 (-) True pxmp4
XM_026929243.2 mRNA upstream 8857 15025127 ~ 15032562 (-) True zmynd10
XM_034313981.1 mRNA upstream 8857 15025127 ~ 15032501 (-) False zmynd10
XM_034313979.1 mRNA upstream 8857 15025127 ~ 15031645 (-) False zmynd10
XM_026929254.2 mRNA upstream 17176 15033446 ~ 15039603 (-) True nprl2
XM_026917581.2 mRNA upstream 260635 15276905 ~ 15278713 (-) True gpx1b
XR_003403256.2 other downstream 134837 14872948 ~ 14875990 (-) False pxmp4
XR_003403257.2 other downstream 134837 14872949 ~ 14875990 (-) False pxmp4
trnae-cuc_5 other downstream 618476 14392280 ~ 14392351 (-) True trnae-cuc_5
TU31994 other downstream 952382 14050401 ~ 14058445 (-) True G27107
XR_004579719.1 other downstream 1103638 13873714 ~ 13907189 (-) False lhfpl4a
TU32819 other upstream 281039 15297309 ~ 15299019 (-) True G27843
TU32916 other upstream 440365 15456635 ~ 15461001 (-) True G27925
TU32920 other upstream 445680 15461950 ~ 15469229 (-) False oxtr
TU34409 other upstream 2256685 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 2497442 17513712 ~ 17529315 (-) False si:dkey-44g17.6

Expression Profile