RNA id: XM_026929753.2


Basic Information

Item Value
RNA id XM_026929753.2
length 4436
RNA type mRNA
GC content 0.42
exon number 7
gene id gxylt2
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 7788563 ~ 7822058 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAATTCGTGGATGGTGTGAGCGCAAAGCTGTGCTTGAGTCTTGGCTCTTCTTCACAATGCGAGTAAAGGGAGCATGGCAGTGCTGCCCGAATACGCTCTAATCATTCATCTGGAGCTCTGACTGGCCATTTCAATGCGTGGCCGAGTGCACAGGGAACTTTTCCACCATGAGAATTCACTGCAAAGTCGTGGCGCTGGCGTTGTGCCTCGGAGTTTTCCTACTTCTGTACTTTTTCGGGGGGAACAGCGCGGACGAGCCGCCGCTCAGCCAAGCTCAGGAAGACCACAAAGTTCCCAGTTTTCCATCTGCGGCTGGACTTGGAAAAATAGTTTCGGGGAAAGTCGAAAAGCCTCCCGAGCCTCCAAAACAGATCCGTCCCAGTCGGAAAGAAGGCTACAGAGGAGGCAATGGCAGCGCTAAGCTTAGGCAGAAGAGTGCACTCGGCCAGTCTGGGTTAAAGGTCCTTCGGGTGGAGGAAGTCATGCACCTTGCTGTTGTTGCTTGTGGAAACCGACTGGAGGAAACTCTTACCATGGTTAAATCAGCACTCCTCTTCAGCATCAAGAAGATCAAATTTCACATCTTCGCAGAGCAGGAGCTGACAGAACAGTTTGAGAAAGAGctgAGCCACTGGCCCCGGCCGCTCTCCTCCAAGCTCCAGTACACGCTTTACCCAATCACTTTTTCCGTGGGGAACGCTGAGGAATGGAAGAAGCTCTTCAAACCATGTGCTGCCCAGAGACTCTTCCTTCCAGTCATCCTGAAAGACGTAGACTCGTTGCTGTATGTGGACACAGATGTCCTGTTTCTCCGGCCAATGGATGACATCTGGAAATTCCTGAAGGCCTTCAACAGCACTCAGTTGGCAGCCATGGCCCCCGAGCACGAGATCCCCAAAATCGGCTGGTATAGTCGTTTTGCAAGGCACCCTTTCTACGGCGTTACAGGCGTCAACTCCGGGGTCATGCTGATGAACCTCACGCGCATTCGCAGCACTCTGTTTAAGAACAGCATGATCGCTAGCGGCCTGTCATGGGAGGACTTGCTTCATCCACTCTACCAGAAATACAAGAATCACATCACATGGGGGGACCAGGACCTCCTCAATATTATTTTCCACTACaatccagAATGTCTGTATACGTTTCCGTGCCAGTGGAACTACAGGCCTGATCACTGCATGTACGGCAGCAACTGCAAAGGGGCAGAGGAGGAGGGTGTGTCTATTCTCCATGGCAACCGTGGTGTTTACCATGACGACAAGCAGCCAGCTTTTAAAGTGGTGTATGATTCTATACGTGATtatccTGTTGGAGAAAACATGTTCCAGTCCTTGTTTTATCCTCTCCAGACCAAATTCTTGGACACGGTCAACACACTATGTGGCAGAGTTCCTCAGGTGTTTCTGAAGCAGATCGAGAAGACCATGAAGGCCGCGTTTGAGCAAAAAGTGGTCCGTCACGCTCGGCCGCCACACAGACAGCGTCGCTGAACTGCAACAGATGCAGTTTATAAATGACATGGAGAAGAGCTGATTCTCGAAAAACCAGTGGTGTTTTTAATGGAACATGTGCAATACCGAGAACTCGGTGTGGTTTCCTGACCAGTGTTCTCTCTCTGGAAAGGATGATGCAGAGCTTCTTGGATAGACTGGGTTTTACGCAGTGGTCATTATGGAATAAATGGCAGCTTGATAAAGGGGTTGCTCTCCAAAGAACTAAACCACTTACATATAAGagcagtggggaaaaaaaaaaagtccataaGGTTAAAACCTAGAAAGGTATTGGGTATATGTTGAATGAATttagcaggattttttttttcagagaagtTGGTATAAGTGATGttaaaatagcaacatttttctCTTACACAGTAACAGAGCAACAGATTGCACACACTATCTTATTAGTTTGACTCTTGTTGCAAAGAATATGAAGACAAATGCAAAGACATGTTGAAAATGCAACTGGGGACCAGACTGTGGGTCAGACAGAGGCAAGAACAGGGTGGTGTAGCACTTGAATGTGCAATGTTCTTCTTCAGAGGTAATGTTTTAGAAGAAAGCAAATGCCAGTCACTGTTGCCTGAGGGCAGCGTTGTAGAACCGAGTGACTTTATTGCCTGATAATGGgctgcttttattcatttcagcaGTCAGATTGTGTCTGTTTACCGCTTTGGCTCTTCTGAACTAAAATCCTGGTTTACATATACGCTCAGTCTACAACAGAGCCCATGTCATAAGCCATAAATAATGTGAAATCTGTGGACATTCCTATGATCATAATAAGGTACAGACATAGCATAAcagctttccttttttttcataattacaGTATTATATTATGATATAAACCGCTAAAAACACAATattgtctggttttaaaaaaaaaaaaaaaaaaactgcacaattgtgtgtttttagaggatttgtgtgtgtatgtgtgatttgCATGCTTCTAAAATTGGATATGACACAGATTTGACCTCTCCTAGGCTTCTACGAGGCATAAAATATGGCAGCGAAATTGCTTTTGGAAACTAATATACTGCTAATGCAGCAGCAATATTCCGAGACATTTGTGCTATTATTTCCATGTTGTGGCAAGAACCCATAAAGAACAGAAATCGTCTTCTAACTCGCTCAGGACCGTTTTTCTGCTCCATGCCCCTTTGAAGGTTGTGCGATGTTCTGCACAGACTCACTAACCATTAATCATCATTCTCCTGAAGTGTGCTGCATGTATAATACGTCGATCATTGTGTATGTGGCGCGCGTCTGCAAGTCAAGATCCCGTTGAACAATTCCAAAATCACGTCACCTCCTTATCAGCTGGGGAACAGAAACTAGTGTGATCAAGCTAATGGGTAAAGAATTATTTCATATTACAACTATTTCAGGGAGTAGATTACATTACTCATTCATAATTCAAACAATAACATGAGGTTATGATGCTGAGTTGTTTTAATGATTGTGAACCTCGTAGTGGTTCCTATTGGAGGAAATTTCAAAGGAAAAATCCTCCCTGAACAATTtccatattaatctttataattaacatggtATCTTCAATGTCatccaaggttttttttttttgtagtgagAGTCTGAGTGGACTTGGTTCAGTCAaaagtttcctacattacccacaatgccattttgACTACCCAtcgatagtggtgcagtgggatttgtgctgcatttgacttaccACGTAATGacgtcattttcaacctccaCACATTTAACGCACACAAAGTCAGAAacaaaacatggacacctccatgttcgtcttttgttagcaccaaactagccagctaactgtgatgagtgatgtgtgATCTTCCTCCTCagaacagcaaactgtatagtcagtgttatagatctAACAATGcaaatgtgtctgtatgttgatcGATCTAAAGCAAACGTATACAGTGTAACTCAGTTAAAAGTAAGAAGTGCTAGTTTGCTTGCTTCTGATACTATGTGCAGCCATGTTGAGTTGATATCGCTCCACAGACTGGGAAGGCGCTCGTAGTTGAAAAGATtaggaatttcaagttgagggggtgttttatttagcttttcCTGGTTGAAGggtgggaattacaagttggaACCTcgagtcaaatgcagcattagccCTCGCTtaatctctacctaaagagagacGAATGCTGGAAAATGGCGAATGAGAAAAGAAGGTCTTGTGCATtcgtttttaggagctaacaggaAAACCCGATCATTTTCACTTACACTGGAGATCGTCAAAATCTTTTGTCCTGTTAACCCAGTTGTAACTGTGCTAGgaaacttctcacaggaataaccaAAATTACTGCAGAATTATTACCGAATTACTAATCTcgtcaaatattttaaaattttatgtaTTTCAGGGAAGAATTTTCCTTTATGTAGTTATACTTAGTTTGGAAGCATATATTtcacatacattaaaaataaaaacacacacacattttttactgaatttttgTAAACTGTGCATTTTCCCAGGATAAGCACTGACCTGTCCCGTGTCAGATCACCAAATAACCCTGTTCATAAACTCCAGAATTACAGAAACGACAAGTAATCATAAACTCCTCTCTGCTAAATATCTTGTGATATTCGCTTGCTATTATATTTCAATCTTTATATTGATCATgcttatacatattttttattttaaagcctGGAAAAACAAAGCAGAGGAAGTGTTGTAAATAATATGACATAAATGTGACCATCAGCACAGCGTTGCTTTTTATAATCTGGGACTGGTTTCCAGCATCATCTCACCGCTGATGAAGTGGAACATTCTGAAACATACAAtcatatatttctgttttttttgttttgttttttatcagAAGTGTCAATGCAtgtcagaaatgaaataaatgaagacGCACAAGCTTT

Function

GO:

id name namespace
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K13676 GXYLT; UDP-D-xylose:beta-D-glucoside alpha-1,3-D-xylosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27688 lncRNA downstream 78353 7705127 ~ 7710210 (-) True G23330
TU27695 lncRNA downstream 113229 7672700 ~ 7675334 (-) True G23337
TU27226 lncRNA downstream 987744 6799518 ~ 6800819 (-) True G22896
TU27070 lncRNA downstream 1022871 6718275 ~ 6765692 (-) True G22743
TU27026 lncRNA downstream 1104833 6683454 ~ 6683730 (-) True G22699
TU27777 lncRNA upstream 61470 7883528 ~ 7883813 (-) True G23417
TU27786 lncRNA upstream 84267 7906325 ~ 7907008 (-) True G23426
TU27787 lncRNA upstream 91638 7913696 ~ 7914794 (-) True G23427
TU27788 lncRNA upstream 93551 7915609 ~ 7916592 (-) True G23428
TU27784 lncRNA upstream 103107 7925165 ~ 7925431 (-) True G23424
XM_026925761.2 mRNA downstream 2114 7778190 ~ 7786449 (-) True ppp4r2b
XM_034298664.1 mRNA downstream 2348 7778190 ~ 7786215 (-) False ppp4r2b
XM_026914958.2 mRNA downstream 418044 7282007 ~ 7370519 (-) False chl1b
XM_026914939.2 mRNA downstream 418044 7282007 ~ 7370519 (-) True chl1b
XM_026914966.2 mRNA downstream 418045 7282007 ~ 7370518 (-) False chl1b
XM_026923857.2 mRNA upstream 169156 7991214 ~ 7993623 (-) True gpr27
XM_026921551.2 mRNA upstream 438427 8260485 ~ 8265229 (-) False mitfa
XM_026921537.2 mRNA upstream 438427 8260485 ~ 8265229 (-) True mitfa
XM_026920277.2 mRNA upstream 521566 8343624 ~ 8351633 (-) True arl6ip5a
XM_026921828.2 mRNA upstream 658991 8481049 ~ 8484147 (-) False tcta
TU26888 other downstream 1308552 6479402 ~ 6480011 (-) True G22591
XR_004577391.1 other downstream 1711686 6074035 ~ 6076877 (-) False LOC117596222
TU26421 other downstream 2252503 5534124 ~ 5536060 (-) False romo1
TU26420 other downstream 2252556 5534124 ~ 5536007 (-) False romo1
XR_003403148.2 other downstream 2587351 5111463 ~ 5201212 (-) False LOC113530384
XR_004580309.1 other upstream 440561 8262619 ~ 8265229 (-) False mitfa
TU28034 other upstream 658993 8481051 ~ 8484029 (-) False tcta
TU28035 other upstream 658993 8481051 ~ 8484181 (-) False tcta
TU28036 other upstream 658993 8481051 ~ 8484114 (-) False tcta
TU28673 other upstream 1613505 9435563 ~ 9441810 (-) False tusc2a

Expression Profile