RNA id: XM_026929869.2


Basic Information

Item Value
RNA id XM_026929869.2
length 2983
RNA type mRNA
GC content 0.43
exon number 3
gene id cish
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15752213 ~ 15756341 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACGCTCGGTTTTTCCTGGAAAGTTCTTAGAATGGTTTTACGAGACGCTCCTAGGAAGGGCTTGTCGCTATGCAGTGTTTATGAGGggggagaaaatggaaacaCGCACTACATTTTGCAATAAACCTATTTTATGACTCAACACATTCCACATTGCAAATGAAGCTGTTATGAAACGTGGTAAAACTGGTGTGATCCATGTGTTTGCTAAAACTGGCTAAAAATGGGAGTTGTACCGGGAATGATTGGGGGCGACTCTGAGAGAAAGTCACTGATGGCGTCAGAGGCGCTGAGACGCGCGCGCTGATTCGGAGAAAAGTCGTTCCTGGAACTCAGGCGGAATCAGCACACCAAAGCCCACAGTTGTTTCGGCTACACTTTTAGGCTGGTAACCGGCTGAAACACTATTCATTAGCGCAAATCGTACCGGATGCTGTTTCAGCTACATCTTTGCTCCTGGGTTATTCATTTCTAACGTCGGCGGATTTCACAAAGAGAGCTGCGATACTGTTAGAGAGGCTCGGGAGAAGGTTTTTAGATCGCGGCGACGCACCGAGTCCCAACAAACCCCAGCTCAAGCTCAAACCCAAGCTCAAACCCAAGCTCAGACCCAAGCTCAGGCTCAGGCTCAGGCTCAGGAGCGGCTGAGAAACTTTCAGAGGCGGTTGAGGAACCTGACTGAAGCCTTCACTCATACGATGATCCTCTGCGTTCAAGGTCCCAGGGCTCTGTTAGGAGACTCGCAGTCTCAGGTGGTTCCTCTCGGGGTTTCAGACCTCTCTTCCTCATCAGCACGTTGTCTTCACAGCACCCCCAAGTTCTGGGACCCCAGCAAAGACTGGTGCACCATCACCAGCAACTTCTGTTACCTTGATGCATCAGGGTGGTACTGGGGCACCATCACAGCCAGTGAGGCCCATTCACTCCTTGAGGCGGCCCCAGAGGGCACGTTTCTCATTCGGGACAGCAGTCACCCTCTCTACATGCTGACGCTATCAGTCAAAACGGGACGCGGCCCCACTAATGTGCGCATTGAGTACAGTCACGGGCGCTTCCAGCTTGACTCGAGTTCACCGGCCCGAGCACGTCTGCTCTCTTTCCCTGACGTGCTGAGTCTGGTGCAGCACTATGCTACCTCAGCGAGGGGACGCGACACGGCTCAGGACGAGGAGTGTGATCCTGTAACTCCCCCGGTACCTAAGGAGTGTGCTGTGCTGCTCAAGCTGAAACGTCCACTCCGCCAGCCTCAGGCTTTTCCATCCCTACAGCATCTTGCACGCTTGGCTATTAATCAGTACACAGCCTGCCCAGCAAAGCTGCCCTTACCAAAGCCATTACTGCAGTACCTACAGAAGTACCCTTTCCAGCTCTGACATCACCATGGAAACACCAACTTGAACATAAAAGAGAGGAAGCTGATGTCATTAATGAAAATGATGCAGGTGAAAGCTCATTTCCAGGGGAATGGGACTTTGGCTCACTAACCAATGGTGGCTATATTTAAAGCTCTAGAACactttctcttttgtttgttaTGACTAATTTATGCTTTGGactaccttttttttctcctgtgggATAAATTAGATTTCCTGTTCCCAAATATAGACTAAAGTGGAAATTCACTGGAACCTGAAAGAATATCAAATGACAAATAGAAAGACGTTTGCAGCTAATCGATGTCAGCATTCAAATGATGTTTGTAGGATATGGTGTAACTAGTTTTATTACCCCACAACTTTGGatgaacctttaaaaaaagacttgGAGACTACTGTGGGTTTGATTCTCCCAAAACATAGCCTGTCCCTAAGGTCATATCACTTATTTTCAGTGattgtttgattaaaaaaaaaatgaaagctacACAATTTTCCCCATGGCTTGAGCTACATGGCTAATGAAGCTAAGTTAAAGACGCATATAGAGCTGTTTTAGCATAGTTAAAACTCCATGcttaaatcatcacacacttgcctAAAACTATGGTGTTATCTGAAGTAGAATTGTTATTGTGGTTTCGGACAGTGTATAACACTGTTATTTGCtatttttcttgttaaaaaaaggtcaaaaatgacatttttctttcctcagAAACTATCACTCTGCACTATCAGCAAACTCAGACTAGCtactttagctagctacagAGCGATCCATAGACTGGGATATAGCcaaaataaacaatgtttaCTTCAGGTTCTTTGCTCAGAGGtagattttatagaaaaatgataGTACAGCAGATTTAGGTGTGTTTTTATAATGAtactttttctgatttttcacagttttctatgatttattttctttttgcatcctagaacacaaacacagctattGTAGCTAGTTAACTTAGCCCAGCTAGTTATTGTTTACATTAGCAATATGCTCAGAGTATAGCTATCCGACAAAGTTTGAAAACTAATATTAAtcgtttttcatttttagcttttaatttttttaaacatcaagtTATGAAACAAATTGCTATTTTGAATAGGAATTGTTAATGGTATTACTTAGTCAGATGATATCCTTTATGACAAGCGTGTGATTATTTTGGAGTTCTGTTTGCACAGTGCTAAACTAGCAACTAGAAGCCtcccttacttgttagctacaaaACTCAAGGAGCAAACACCAGACTCCAAACATAATTTGGCCGACTAACAAGAATTATGGTTAGggaaaatttgtgtaaatttcatttttggactGTTCTTAAATTCTTAATTTCTTACAGAGACAAACAAGGGTGAGGGGCTGCCAGTGAGCACACCAACATTAAGTCAAAGCCCTGTGTTGTCTCTCTTGCtttcctttttactttttctacGCAAAATTCGTTCTGGTACATATTACTATATAATCAGTccagaataatttattttttctgtcccCACAATGTGggtgtttgtatatatttatggaCAAAGatcctttttattttgtaataaaagaaaaatactgaacCGTT

Function

GO: NA

KEGG:

id description
K04701 CISH; cytokine inducible SH2-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33217 lncRNA downstream 26757 15720767 ~ 15725456 (-) True G28191
TU33208 lncRNA downstream 70169 15681570 ~ 15682044 (-) True G28182
TU33196 lncRNA downstream 135465 15615025 ~ 15616748 (-) True G28173
TU32946 lncRNA downstream 248170 15503832 ~ 15504043 (-) True G27953
TU32928 lncRNA downstream 274205 15477790 ~ 15478008 (-) True G27935
TU33234 lncRNA upstream 30512 15786853 ~ 15788153 (-) True G28207
TU33280 lncRNA upstream 172700 15929041 ~ 15933858 (-) True G28232
TU33314 lncRNA upstream 279492 16035833 ~ 16045675 (-) True G28256
TU33316 lncRNA upstream 281642 16037983 ~ 16039793 (-) True G28258
TU33349 lncRNA upstream 366388 16122729 ~ 16122949 (-) True G28278
XM_026919148.2 mRNA downstream 25099 15618351 ~ 15727114 (-) False srgap3
XM_026919138.2 mRNA downstream 25099 15618351 ~ 15727114 (-) True srgap3
XM_034314047.1 mRNA downstream 183785 15505644 ~ 15568428 (-) False rad18
XM_034314051.1 mRNA downstream 183785 15505644 ~ 15568428 (-) False rad18
XM_034314053.1 mRNA downstream 183785 15511866 ~ 15568428 (-) True rad18
XM_026920628.2 mRNA upstream 6195 15762536 ~ 15775878 (-) False LOC113530515
XM_026920619.2 mRNA upstream 6195 15762536 ~ 15775877 (-) True LOC113530515
XM_026920638.2 mRNA upstream 6195 15762536 ~ 15773526 (-) False LOC113530515
XM_026920652.2 mRNA upstream 21849 15778190 ~ 15784244 (-) True wdr82
XM_026942966.2 mRNA upstream 35227 15791568 ~ 15794776 (-) True cplane2
TU32920 other downstream 282984 15461950 ~ 15469229 (-) False oxtr
TU32916 other downstream 291212 15456635 ~ 15461001 (-) True G27925
TU32819 other downstream 453194 15297309 ~ 15299019 (-) True G27843
XR_003403256.2 other downstream 876223 14872948 ~ 14875990 (-) False pxmp4
TU34409 other upstream 1516614 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 1757371 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34529 other upstream 2192816 17949157 ~ 17949718 (-) True G29263
TU34546 other upstream 2314646 18070987 ~ 18072909 (-) True G29279
trnae-cuc_6 other upstream 2820883 18577224 ~ 18577295 (-) True trnae-cuc_6

Expression Profile