RNA id: XM_034311618.1


Basic Information

Item Value
RNA id XM_034311618.1
length 5389
RNA type mRNA
GC content 0.49
exon number 31
gene id cadpsb
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15795801 ~ 15874718 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGCGGAGAGATTGCGGTGTCTGTCTCATCCGGAGTCCGCTGCCTCTTCGCTGGGACGTAAGACTCTCTCCACCGCTCCGCACCTCCATCCACTACTTCACCAATAAGCCGAACTCGGTTCCTCTGGTTTTACTTTTTAGCAGGGTGtcgttttttcttttcagtcgAGTGCCTGCATCGAAGCAAGCATGTTGGATCCGTCATCCAGCGAGGAGGAATCGGACGGGATAGTAGAGGAGGAGAGCAAAGAGACGCTGGCGCCGCAGTCCGGAGGTTCTCGCGTGTCGCCGAGCAGAGGCAGCGAGAGCTCGGAGCGGCTGCAGCCCGGGGGCCGTGGGAGCAGCGCCCGCCCCAGCAGCCCGAGCCCGTCCGCCGCCAGCGAGCACGAGAAGGAGGACGCCGAGAAGCTGCAgcgggaggaagaggagagaaagaagcgCCTGCAGCTCTACGTCTTCGTCATGCGATGCATCGCGTATCCGTTCAACGCCAAGCAGCCGACCGACATGGCGAGGAGGCAGCTCAAGaTCTCCAAGCAGCAGCTTCAGACCACCAAGGATCGCTTTGAGTCTTTCCTCAAAGGAGACACTCAGATTGTGGCAGATGAGGCCTTCATCAATGCAGTTCAGAGCTACTATGAGGTGTTTCTGAAGAGCGATCGCGTGGCTAAGATGGTCCAGACTGGAGGTTTTTCTGCTGTGGACTGCCGTGAAGTGTTCAAGCGCCACATTGAGAAGCGCGTCCGCAGTCTGCCTGAGATTGACGGCTTGAGTAAAGAGACGGTCCTGAGCTCCTGGATGGCCAAGTTTGATACCATCTACCGCGGGGATGAGGACCCACGCAAGGCTCAGCAGCGCATGACGGCCAGTGCCGCATCCGAGCTCATCCTCAGCAAAGACCAGCTCTATGAGATGTTCCAGCAGATCCTTGGCATCAAGAAATTTGAGCACCAGCTGCTGTACCAGGCCTGTCAGttGGATAATCTGGATGAACAGGCTGCTCAGATCAGGAGGGAGTTGGATGGGCGTCTGCAGATGGCTGATCAGATTGCCAGGgcAGGCAAGTTTCCCAAGTTTGTGTCAAAGGAGATGGAGGCCATGTACATTGAGGAGCTGAAGTCATCTGTAAATCAGCTGATGGCTAACCTTGAGAGCATGCCTGTGTCCAAGGGAGGAGAGTTCAAACTTCAGAAACTGAAAAGAGGACACAATACATCTATCATTGACATGGGCCAGGAGGATGAGAACCAGCTCTCCAAGTCAGATGTGGTTCTCTCCTTTACACTAGAGGTAGTGATCATGGAGGTGCAGGGGCTGAAATCTCTGGCCCCAAACCGCATCGTGTACTGTACTATGGAGGTGGAGGGAGGAGAGAAGCTACAGACTGACCAGGCTGAGGCTTCCAAACCAACatGGGGGACTCAAGGAGACTTCACCACTACACACCCTCTGCCAGCAGTGAAGGTCAAACTGTTCACTGAGAGTACAGGGGTGTTGGCCCTGGAGGACAAGGAGCTGGGCAGGGTTGTCCTTCACCCGACCCCTAACAGTCCAAAGCAGTCTGAGCTGCATAAGATGACCGTGACCAAGGCCTGCCCAGACCAAGACCTGAAGATCAAACTGGCTGTTCGCATGGACAAGCCCCAGAACATGAAGGCTTGCGGGTACTTATGGGCTTTTGGGAAGAATGTTTGGAAGCGCTGGAAGAAGCGCTTCTTTGTTCTGGTCCAGGTGAGCCAGTACACTTTTGCCATGTGCAGCTATCGGGAGAAGAAGTCAGAGCCACAGGAGCTGCTACAGCTGGATGGGTATACTGTGGATTATACTGACCCACAGCCAGGTTTGGACGGAGGCCGTGCTTTTTTTAACGCCGTCAAGGAGGGCGACACTGTGATCTTCGCCAGCGATGATGAGCAGGACCGCATCCTATGGGTGCAGGCCATGTACCGGGCTACCGGCCAATCACACAAGCCAGTCCCGCCCACCCAGGTCCAGAAACTCAACTCCAAGGGCGGGGCATCGGCACAGATGGATGCACCCATTTCTCAGTTCTACGCTGATAGGGCACAGAAACACGGCATGGATGAGTTTATCTCGGCTAACCCGTGTAATTTTGACCACGCCTCGCTGTTCGAGATGGTGCAGAGGCTCACGCTGGACCACAGGCTCAATGACAACTTTGCATGCCTGGGTTGGTTTAGCCCAGGTCAGGTCTTTGTTCTGGATGAGTACTGTGCTCGAAATGGTGTGAGAGGATGCCACAGGCACTTGTGCTACCTTAGGGACCTGCTGGAGCGAGCAGACACAGGTCACATGATTGACCCAACACTGCTGCACTACAGCTTCGCTTTCTGTGCCTCCCATGTCCATGGCAACAGaCCTGATGGTCTCGGAACCGTGATAGTGGAAGAAAAAGATCGCTTTGAGGACATCAAAGAACGGTTACGTGTTCTGCTGGAGAACCAGATCACAAACTTTAGGTATTGTTTTCCGTTCGGGCGTCCTGAGGGAGCACTGAAAGCCACTCTGTCTCTGCTGGAGAGGGTTCTGATGAAGGACATTGTGACCCCAGTGCCACAGGAAGACGTGAAGGCTGTCATCCGTAAATGCCTGGAGCAGGCAGCTCAAATCAACTACCAGCGCATTACTGACTACGCCAGAGTGGAAGgaaaaaagagggaaatgtATGATCACCCTGTCTACTCCTTGGCAACACAAGTGATGGATTTAACCATCCAGAATGTAGCAAACCTAGCTACTCCTGCCAAAAAACTGGAGCATGTCATCCGCCTGGCAGAGTTAGTCATTGAGGTTCTACAGCAGAATCAGGACCATCATGCTGAGGCTGCGGTCACAAGTACAGGAGACCAGTCGGGAAAAGAGGCCTTTGCCTGGTGGTCAGATCTGATGGTGGAGCATGCCGAGCACTTCCTGTCCCTTTACGGCGTCGATATGGATGCGGCTCTTGAGATCCAGTCTCCTGAAAGCTGGGACAGTTTCCCTCTCTTCCAGCTCCTCAATGACTTCTTACGGACTGACTACCATCTGTGCAATGGGAAGTTTCACAAGCACTTGCAGGACCTGTACGCGCCGCTGGTGGTGCGATACGTCGATCTAATGGAGTCCTCCATCGCTCAGTCCATTCACAGGGGCTTTGAGCGCGAGTCCTGGGAACCTGTGAAGAGTTTAACAAGTAATCTACCCAATGTGAATCTACCAAATGTGAACCTCCAAATTCCCAAAGTACCAAATCTTCCTGTGCCAGTAGCAGGACTATCTGTTAACCTTCCACAAATGCCTAGCTTTTCCACTCCATCCTGGATGACTGCTATTTATGACTCTGATAATGGCTCGGGGACATCAGAGGATCTGTTCTGGAAGCTGGACGCCTTGCAGACATTCATCAGAGATCTGCACTGGCCTGAGGAGGAGTTTGCCAAGCACCTAGAAAACCGGATGAAGCTCATGTCCAGCGACATGATTGAGTCCTGTGTTAAACGCACCAGGGCAGCATTTGAGTCCAAGCTGTCCAAGAGTAGCCGCTCTACAGATTTCCGCATCCCACTCTCCTTATGCACCATGTTCAACGTGATGGTGGATGCCAAGGACCAGTCAGCTAAACTGTGTGCCATGGAGATGGGCCAGGAGAAACAGTATCACTCTAAAATCGACGACCTCATTGAAGAGAGTGTGAAGGATATGATTTCACTTTTGGTGGCTAAGTTTGTGGCGATTCTGGAAAGTGTTCTAGCCAAGATCTCTAGGTATGATGAAGGAactctcttctcctccttcctttccttcacGgtgAAAGCAGCATCAAAATATGTGGATGTCCCTAAGCCAGGAATGGATGTTGCTGATGGCTATGTGACCTTTGTTCGTCACTCTCAGGACATACTGCGAGATAAGGTCAATGAGGAGGTGTATATAGAGAGGTTATTTGATCAATGGTATACAGCCACCATGAATCTGCTGGGGACTTGGCTCACTGACCGAATGGACCAACAGCTCCATGTGTACCAGCTCAAAATCCTCATCAGGATTGTAAAGAAAAAATATCGAGATTTTAGGCTGCAAGGCGTTCTTGACTCAACGCTGAACAGCAAGATGTACGAGACGGTACGGAACCGGCTCACGCTGGAAGAGGCCACTGCCTCGGTCCGAGAGGGTGGCATGCAGGGCATTTCCATGAAGGACAGCGATGAAGAGGACGAGGAGGATGATTAGAGCACCAAGCCACGTGGTGTGCTCTAAACCTGAGTCTCTCTGACCCCTACACCACCCTACCCTTTCCCCATAGCCTGGTAACAGAAGATGCATGTACCCACTCTGATTACTCCAGTTAGCCATCCTAGGACCTCCCGTCATCTGCTCGATATGCCCACAAACAGAGCTAAAGTCAAGAAAAAGCTAGTAAATATAATGagtaaaaagaaatgttaaaaagagTTACAAAGAATATGACTGACAGTTTTAGCTGTGTTATGATATATAAtaaagaatgggaaaaaaaaaaacaaagatttttttggACTAATTTATTTGGGGATTTATTTCTATGTGTTCCTAAGCAATATGGAGTACCATTTGTTTGACAATGTCGAGTGAGATTATTAGGTGTGTCCCTGTCCAATGCGATAACATATATGGCGCTTCTTTGACGTACTCTTACATACATTAATGGTACATTGTCGTAAAAGATGAGTGTATGGATCCTTTTCTTTGTCTTGTCTGTTTCTAAAGTGGATGCCAACTGCttcaaaactgaaaatgaacCTCTGTACTTAAGTTAAAAGTTGTTAACTGTAAATGTCCTCTGTGTCTGCacattctcattaaaaaaatgtaacgatttttttctttacttgtgCTGAGCCTCTGTGACTCTTACGAGAATCTTGTGTTGCATTTCACCACCAAGACATTGTCTCAACTTCATCTTAAAACTAATATGAATTGGTATTCTAGAAAGGCAATATTCTCTTAGCTCCATTTTGATATCTCATTGGAGACGTCTTTTATTTAGATGTCAGAAATGACTaccaaataatatatttttgttcagtttaaCTTTTACAAAGTAAAGTGATTCTTGCCTTTTTTGGTTTTTATGTTCTATTCAAAGCAATCTTTCAGGTTATTACTTACATAGCCAGAGATATGTGCCATTCTGGGAGGTCTCACTATTGATTTGTATATACACAGCTGTACATTGCACTCTGAGCCATCACTGCATGCTTGTGGGTTCCACCTTCTCCAAAAGctctatgtttttcttttctgtgtcaGTTAGCTGGTGGATTCATTCTTGCGTTTGCCTTATCAAAGCCAACAGTTGTTATATGCAAGAGCTGTGGCCTCTCAATAAATATAACTGTACAAATATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33234 lncRNA downstream 7648 15786853 ~ 15788153 (-) True G28207
TU33217 lncRNA downstream 70345 15720767 ~ 15725456 (-) True G28191
TU33208 lncRNA downstream 113757 15681570 ~ 15682044 (-) True G28182
TU33196 lncRNA downstream 179053 15615025 ~ 15616748 (-) True G28173
TU32946 lncRNA downstream 291758 15503832 ~ 15504043 (-) True G27953
TU33280 lncRNA upstream 54323 15929041 ~ 15933858 (-) True G28232
TU33314 lncRNA upstream 161115 16035833 ~ 16045675 (-) True G28256
TU33316 lncRNA upstream 163265 16037983 ~ 16039793 (-) True G28258
TU33349 lncRNA upstream 248011 16122729 ~ 16122949 (-) True G28278
TU33332 lncRNA upstream 251186 16125904 ~ 16126299 (-) False eif4enif1
XM_026942966.2 mRNA downstream 1025 15791568 ~ 15794776 (-) True cplane2
XM_026920652.2 mRNA downstream 11557 15778190 ~ 15784244 (-) True wdr82
XM_026920628.2 mRNA downstream 19923 15762536 ~ 15775878 (-) False LOC113530515
XM_034311668.1 mRNA upstream 24573 15899291 ~ 15910072 (-) False LOC113536620
XM_034311660.1 mRNA upstream 24573 15899291 ~ 15910072 (-) True LOC113536620
XM_034311664.1 mRNA upstream 24573 15899291 ~ 15910071 (-) False LOC113536620
XM_026930691.2 mRNA upstream 24573 15899291 ~ 15910070 (-) False LOC113536620
XM_026930683.2 mRNA upstream 24573 15899291 ~ 15909957 (-) False LOC113536620
TU32920 other downstream 326572 15461950 ~ 15469229 (-) False oxtr
TU32916 other downstream 334800 15456635 ~ 15461001 (-) True G27925
TU32819 other downstream 496782 15297309 ~ 15299019 (-) True G27843
XR_003403256.2 other downstream 919811 14872948 ~ 14875990 (-) False pxmp4
TU34409 other upstream 1398237 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 1638994 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34529 other upstream 2074439 17949157 ~ 17949718 (-) True G29263
TU34546 other upstream 2196269 18070987 ~ 18072909 (-) True G29279
trnae-cuc_6 other upstream 2702506 18577224 ~ 18577295 (-) True trnae-cuc_6

Expression Profile