RNA id: XM_034310289.1


Basic Information

Item Value
RNA id XM_034310289.1
length 3471
RNA type mRNA
GC content 0.47
exon number 8
gene id brinp3a.1
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 24077383 ~ 24130026 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acacacactaacacagacaCGAGGTGCAGATCCATGGAGTATACCCAGGCGAGGATCATCCCGGATCCCATCGACAAGCAAAACCCAGAACTCCTGCACTGCTGTAGGggtttcaaactttaatttcaCCCGCGTGAGCCCTCTTTCTGCCTGCAGAGAGGCACGGGCAGTGAAGGAGAAGACGGGAAGTCTGCACGGTCAGTCGACACAAGGACAGCTTTTCTTTATCAACTGAATTTTAAATGCTATTTGTCGGACTGCATAGTGCTGCATATTGGCCtcgtctgtctgtgtgtgtgtgtgtgtgtgtgtgtctgtccggGAGTGCACGCGCGGACTGCTGACTGCTGACTGATGTCACGCGCCGTGGTTTTCCGCCGCCGTTTGCACTTCTCCAAAACACTGAGGTGAAGTGAGCGGAAGGTCATCCGAAGATGCATGTCAACTGATCCaagatttattgcattttattttattttgagcGCTTCGATTTGCAAACCTGGGATTTGACTGGGAAGTGCCTGAACAGCCCAGCACTTCAAGAAGCACTTTCAGGAGGTGAAGAAAGTCCTGAGAGAATGTGGAGTCGTGGGGTGAAGCATGAGCTGCCGGTGTGTTGCTTTTAGACTGGCGTGTCTCATGTGTCCATGGGAGTGTATTTTACTAAGCCTCCACTGCTGGGTTGTAGCCTCAGCCACAGGCTCGCGGGATGCTGCTGGCCCTTTTGGCTGGCTCCTTTCAGACAAAGGGCCTTTTCATCAGTCGCAGGAATTTACGGAGTTTGTGGAGCGCTATCAACAGGGCTTCACCACCAGAGAGTTCGGACGCTGGAAGGTGAACAGCTTGGCTCTGGAAAGGGAAGACAATGGCATTGCTTTGCCCCTCGACCCAGAGTTCATGCAGACCATCAGGCAGCTGGGCCGCCGTCCCACCCTCAGTGCCATCACCGAGAACATCATCAAGAAATACGGAACACACTTCCTGCTCTCAGCTACATTGGGAGGTGAAGAGGCTTTAACTATTTTTGTAGACAAGAGGAGACTGAGCCGCACTGCCGACCCGACTGACTCCAACAGCACAGCTGTGACTCTGGAGGCACTCCACCAGCTGGCTGCCTCCTACTttatagacagagagagcacaCTGCGCAAACTGCACCACCTCCAGATCGCCTCGACTGCCATCAAGgTTACAGAAACAAGGACAGGCCCTCTAGGATGCAGTAACTATGACAACCTCGATTCTGTCAGTTCGGTTTTGGTTCAGAGTCCTGAGAACAAGATTTATTTACAAGGGCTTCAGGCTATTCTGCCTCGGTACCTGAAGAGTCGATTTGTCCAGGCAGCCCTCAGCTATATCAGCTGCCATTCCGAAGGCCAATTTAGGTGCAAGGACAATGACTGCTGGTGCGAGTGCAGTGTGGATTTCCCCCAGTGCAACTGTCCCACTGAGAACCTGGAGGCCATGCAGGACAGCCTGAGGCACATCAGAGAGTCCTGGGCCCAAGCCAACCATGAGTTTCAGGAGTCAGAAGAGTTCCAGAATTTTGTGCGAAGATTACCGACATTCTACGCTCTCAACACATCTGCTATAAGGTACTTTTGGAAAATGGACCCGGCTGTACACCAGCGCTTTCAGCTGCTGGAGACTAGCACTCGACAGCTCCTTGGCAAAGCACACCGGATTGTCAGCAAGCTTTTCACTCTCAGCAAGAGGTGTCGAACTCAGCCCAAAATATCTGTGCCCAAAGAGAGGTCTTACATCTACTGGCTGAACTACATCCTTTCCCTTATGTACTGCAGCGAAAATAATCAGCTAGGCACGTATATGGAAGAGAGGAGGACCTGCTCCTGTCAGCATGAGACCCCATCATGCCAAGGTATCATTCCATGCATGGTGGGTGAGGGGCCACTTTGCTCTTCCTGCTCCTATGAGAACCGATCACGGTGTGCCAGCTGTAACCCAGGTTATACCCTGAGTCAAGGCCTGTGCAGGAACATCATCCCTGACTCCACTGATAATTACATAGGTTTTGAGACGGATCTTCAAGACCTAGAGTTACGCTATCTCCTCCAGAAGCGAGACGGCCGAATCAACATCCACGCCATGTTCATTAGCAATGATGTGAGGCTCAACAACTGGTTTGACCCTTCGTGGAGGAAGAGGATGCTCCTTACGCTGAAAAGCAACAAGTTTAAGTCCAGTCATGTACACATGCTTTTGGGGATTTCCCTTCAGATCTGCCTTACTAAGAACAGCACCTTGGAGCCCTTGTTGTCTATCTACATCAACCCATTTGGAGGGAGTCACTCAGAGAGCTGGATCATGCCCATAGACCAGAACAATTACCCTGACTGGGAGAGGACCAAGTTAGATATTCCACTTGACTGTTATAACTGGACCCTCACTCTGGGGAACAAGTGGAAGACATTTTTCGAGACTGTACACATATACCTGAGGAGTCGCATCAAAACAGCCTCAGCCCATGGAAACGGCACAATCTATTATGAGCCATTGGAGTACATGGACTCCTCACGGAATCTGGGTTATATGAAAATCAACAGCATGCAGCTGTTTGGTTACAGCATGCACTTTGATCCTGAAGCAATCCAGGACTTGATCCTCCAGCTGGACTATCCGTACACACAGGGATCCCGGGATTCAGCCTTGCTGCAGCTGCTAGAGATACGAGACCGAGTTAACAGACTGTCTCCACCAGGCCAGCAGCCCCTGGACCTGTTCTCCTGCTTACTGCGCCATCGCCTCAAACTCTCCACGAATGACGTGGTCCGAATTCAGGCTGCTTTACAGGCTTTTAGTGCTAAGCAGCCCAATTCAATGGAGTATGAAACCACTAAACTATGTAGCTAATCAGACACTGATGCTGTTCCTAACACTAAAGCATAAACCAGATCACACTTTGAAGAATTCAgctcatgctttttttttccttcaggaaCATTAATTATGACTTTCAGTGGACAACTGAAGTCCATGCGTTGCCTTTTCATTTCAAACTACATTCATGGTTTATAGTATTTTAGTAGTAATGTActtgaatttaattttcataCCGCTGATTATGATTAATAGAGTagattaaatgtaaatcattgGAATTTAGCTTTCCCTTCACAGtatagtttttatttcatcacttgTGCATAACAGATGGTACCCATGTAAATCAGTGTAATCTGACCATCCTTCTGAGACAAATCCAGACCTCTTCATCTGTACAGCTCTATCTGTCAATCCTGTAACACTCGCATATAACTATCTGCTTCAGCAGCAGTTGAGTTTGATGGTAGAAATATTTCTCAGATATTTGTACAAATGCATTATGACTATAggaataattttgtttaaaaaaagacatatgTCCTAACTATATGTTCCATgtgcttttatatttataaacatattatttgtgaaatattaCAGAGGTAATgtcaataaaaatgtacagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38557 lncRNA downstream 56604 24020125 ~ 24020779 (-) True G32686
TU38487 lncRNA downstream 393697 23678782 ~ 23683686 (-) True G32629
TU38121 lncRNA downstream 851994 23225082 ~ 23225389 (-) False dmrt2b
TU38041 lncRNA downstream 1034621 23042531 ~ 23042762 (-) True G32244
XR_003403825.2 lncRNA downstream 1082194 22990447 ~ 22995189 (-) True LOC113538262
TU38651 lncRNA upstream 88467 24218493 ~ 24218937 (-) True G32777
TU38655 lncRNA upstream 129280 24259306 ~ 24259855 (-) True G32781
TU38717 lncRNA upstream 352637 24482663 ~ 24482990 (-) True G32840
TU38731 lncRNA upstream 443156 24573182 ~ 24576092 (-) True G32852
XR_004579665.1 lncRNA upstream 578700 24708726 ~ 24723852 (-) False LOC117599215
XM_026933488.2 mRNA downstream 158336 23902151 ~ 23919047 (-) True rgs8
XM_034298073.1 mRNA downstream 163799 23902151 ~ 23913584 (-) False rgs8
XM_026933475.2 mRNA downstream 188917 23886767 ~ 23888466 (-) True rgs16
XM_026933477.2 mRNA downstream 188917 23886772 ~ 23888466 (-) False rgs16
XM_026933524.2 mRNA downstream 210766 23852014 ~ 23866617 (-) True rgs5a
XM_026933450.2 mRNA upstream 200139 24330165 ~ 24381493 (-) True brinp3a.2
XM_026933302.2 mRNA upstream 838524 24968550 ~ 25170260 (-) True LOC113538330
XM_034313653.1 mRNA upstream 1014792 25144818 ~ 25170260 (-) False LOC113538330
XM_026933502.2 mRNA upstream 1430764 25560790 ~ 25564089 (-) True pou4f1
XM_034310133.1 mRNA upstream 1439995 25570021 ~ 25580542 (-) True obi1
XR_003403848.2 other downstream 445370 23616157 ~ 23632013 (-) False uap1
XR_004580160.1 other downstream 2545955 21463861 ~ 21531428 (-) False raver2
XR_004577321.1 other upstream 1770704 25900730 ~ 25907994 (-) False LOC113538393
XR_003403851.2 other upstream 1951123 26081149 ~ 26105456 (-) False slc19a1
TU39875 other upstream 2500803 26630829 ~ 26638504 (-) True ecrg4b
TU39865 other upstream 2509807 26639833 ~ 26649379 (-) False si:ch73-23l24.1
TU39866 other upstream 2509807 26639833 ~ 26649379 (-) False si:ch73-23l24.1

Expression Profile