RNA id: XM_026933450.2


Basic Information

Item Value
RNA id XM_026933450.2
length 3589
RNA type mRNA
GC content 0.47
exon number 9
gene id brinp3a.2
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 24330165 ~ 24381493 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGGGGCGACGAAAGACCTCGCACCCGCGTCTACCGGCGACTATCCGCTCAAacgcgtctctctctctctctctctctctctctctcacacacacacacacacacacgatgccGGAGTAGGGTCAGGCAGAGAAGCGCTTATGCTGACTTTCTAACGGAATATCTAAGACGTGCGTTTACGCACAAGCCTCCGACTGTTTCTTTAGTGCGCACGGTGTCTCTTTTTGGCCGTTTTTAAaggatatcttttttttaatgaaaggttGTCGTGTTTCTACCAGGAACATCCAAGTCGCTATCGGATCACCCCGCGCAGAGCATCATGGATGCGGTTCCTTACCGAAGTTGGCCATCGTGCGGGAGCGCGAGCGCGGACTGAAACACGCAGCCTGGTTCGGCTCTAATGCGAACTCATCAGCGTGCGTGTCATTATTCCTGAAGCCAAACACACGCATGAAGAAGCCCGGTAAACTGGAAATGACTGATGAGCACATTTGGAGCACGAATGGGACGCGCTCAGATGAACTTTGAATGGGGCTCTTTGTCGGGGAGATGGGAGGCCATGTTGATATCCAGTGCTGAGTGGTGGAGCCAGTGAATCCTCTCTCATGGCTTTATGGGAGTTGTTGCTATCTCTCAGCCTTCACTGCTGGCTGGCTTCGTGTGCCAGTTTAAGTGAGGAAGGCCCCGCTGGACCCCTGGACTGGCTCCTCTCCGACAAGGGCCCCTTCCATCACTCCCAGGAGTACACTGACTTCGTGGAGAGGAACCGCCAGGGCTTTTCTACTCGCTACAAGATATACAGGGAGTTCGGACGCTGGAAAGTGAACAACCTGGCTGTGGAGCGGAGGGATTTCCTGGACTCCCCCTTACCCCTCATGCCGGAATTCATCCGCAACATCCGACTCCTTGGACGCAGACCCTCTGCAAAGCTAATTACCGAcaaccttattaaaaaatatgggACGCATTTCCTCCTGTCGGCCACGCTAGGAGgtgaAGAGGCTCTAACCATATTTGTAGACAAGAGGAAGCTTAACAAGAAATCAGAAGTGAGTGACTACACGAGTAACAGCACAGCTGTGACTCTTGAGGCACTCCACCAGTTGGCTGCCTCCTACTtcatagacagagagagcacaCTGCGCAAACTGCACCACCTACAGATTGCCTCCACTGCCATCAAGGTAACTGAAACAAGGACTGGCCCTCTTGGATGCAGTAACTATGACAACCTTGATTCTGTCAGTTCGGTTTTAGTTCAGAGTCCTGAAAACAAAGTCCACTTGCAAGGTTTGCAGGTCATTCTGCCAGACTACCTCAGACATACCTTTGTCCAGGCAGCTCTTGGCTACATTGCCTGCAATGGAGAAGGTGACTTTGTGTGCCGGGATAATGACTGCTGGTGCAAGTGTGACCCAAAGTTCCCAGAATGTAATTGTCCCTACATGGATATTCAAGCCATGCAAGAGAGCCTTCTTCGAATCTCGGAATCATGGGAATTCCTTTACAAAGAATTCAAGGAATCAGATGAGTTCAAGTCATTTCTGATGAGGCTGCCACAGAACTTCTACCTCAACGCCTCTGCAATCCACCACTTATGGCTGCTGGATGGCATGTTTCAGCGGCGCTATGAGCTGCTAGAGAGCAGCATGAAGGGTCTGTTCAGGAGGGCCCAGCGAGTTGTCTACAAGCTCTTCAGTCTGAGCAAGAGGTGTCAAAAGCAGCCCCTTATCAACTTACCACGTGAAAAGCCACGGTCATACTGGCTGAACTACTTCCAGTCATTACTCTACTGCTCAGAGAACAACCAGCTGGGCTTTTTCTCAGAGGAGCTGCACACCTGCATTTGCGCATATGACCAATACTCATGCCAGGCACCCACTCCATGTTCTGTAGGAGAGGGTCCAGCTTGTGCATCCTGTGCCAGTGACAACTACACTCGCTGCGGTAGCTGCAACACTGGCTACATGCTAAATCAAGGAACCTGTCGGCCTATGGTGGCTGATTCCACTGACAACTACCTGGGCTTTGAGACTGACTTGCAGGACCTAGAGCTGCGGTACCTCCTGCAGAGGGCTGATCGTCGCCTAGAGGTCCATGCTATCTTCATTAGCAATGATATGCGCCTCAACAGCTGGTTTGACCCTTCATGGAGGAAGAGAATGTTGCTCACACTAAAGAGCAACAAGTACAAATCCAACTTGGTGCACATGCTTCTGGGGATCTCCCTCCAGATTTGCCTTACTAAGAACAGCACCTTGGAACCTGCCCTTACTCTTTTCATCAACCCCTTTGGTGGGAGCCATTCAGAGAGTTGGTTGATACCTGTAAATGAGAACAAATTCCCAAACTGGCAGTCCACTAAGCTGAACCTTCCACTTGAGTGTTTTAACTGGACCCTAACTCTGGGCAACAAGTGGAAGACGTTCTTTGAGACTATTCACATTTATCTGAGAAGCCACATTAAAACATCAGGTCCTACTGCCAATGAGACTATTTACTTTGAACCTTTGGAAATGGCAGACCCTTCCAGAAACTTGGGTTACATGAAAATCAACAGCATACAAGTTTTTGGTTACAGTATGCATTTCAACCCGGAGGCAATCCGGGACTTGATCCTGCAGCTGGACTATCCGTACACACAGGGCTCACAAGATTCTGCCCTCATGCAGCTGCTAGAGATCCGAGACCGCGTTAACCGACTGTCTCCACCAGGCCAGCAGCCTCTGGACCTGTTCTCCTGCTTACTGCGCCATCGCCTCAAACTCACAGTCAATGAAGTGGTGCGTATCCATTCTTCTCTCCAGGCCTTCAGCGCCCGACTCCCAAACCCTCTTGATTATGAGACAACCAAACTttgtagctaacaaataaaaGGTCGGGCATCTAGAATATGTttacacacagagaggagaCTGCGcatgaataaaagaaattacttaattattgactaaaatactgtatatctttcCACATTCACTCCAAGTGTACTCAAATCAACCAATTCAGTTTTCTTGTATAGAGCAGCACTTAAAACATTTGGTGGGCCTTTGCTATATATGACTGCAaattttctatgttttttttttttttgttgttggttttttttgcttcaGTGACAGTGCACTTTCCTTAAACAGAATACAGTGATGTCAGTatgttttgtagataaattgttattaaaacttcatgtaatattaattatttactagTCTTCTTTTTTGGTTTATCTGTTCAGCAATTTACATACTGGGAAATTATGTCCACCTTTTTATATGATGTAACGATAATGTAAATGAGATTAAACATAAGTGCTTGATTAAATAGTAATATAACATTCATTAACGTAATTACATTATGGCTTGTTATGATAAGctgtctccttctgtctgaaagaatcagaattttttttttaacaaaaaaatgacatggtTGATTAACATTACAGATCATGTGTTTTGTGACAAATTAACAGTGCTGCTCACTGCCATGGCGAAGCTGTGTTAGACTTTCTCAGATGTGTTGATATCATTTTATAAAGTCGGGccttacatttcacacacacacacacacacactcacacaca

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38655 lncRNA downstream 70310 24259306 ~ 24259855 (-) True G32781
TU38651 lncRNA downstream 111228 24218493 ~ 24218937 (-) True G32777
TU38557 lncRNA downstream 309386 24020125 ~ 24020779 (-) True G32686
TU38487 lncRNA downstream 646479 23678782 ~ 23683686 (-) True G32629
TU38121 lncRNA downstream 1104776 23225082 ~ 23225389 (-) False dmrt2b
TU38717 lncRNA upstream 101170 24482663 ~ 24482990 (-) True G32840
TU38731 lncRNA upstream 191689 24573182 ~ 24576092 (-) True G32852
XR_004579665.1 lncRNA upstream 327233 24708726 ~ 24723852 (-) False LOC117599215
XR_004579666.1 lncRNA upstream 337341 24718834 ~ 24723852 (-) False LOC117599215
XR_004579664.1 lncRNA upstream 338462 24719955 ~ 24723852 (-) True LOC117599215
XM_034310289.1 mRNA downstream 200139 24077383 ~ 24130026 (-) False brinp3a.1
XM_026933099.2 mRNA downstream 200139 24077383 ~ 24130026 (-) True brinp3a.1
XM_026933100.2 mRNA downstream 200712 24077383 ~ 24129453 (-) False brinp3a.1
XM_026933488.2 mRNA downstream 411118 23902151 ~ 23919047 (-) True rgs8
XM_034298073.1 mRNA downstream 416581 23902151 ~ 23913584 (-) False rgs8
XM_026933302.2 mRNA upstream 587057 24968550 ~ 25170260 (-) True LOC113538330
XM_034313653.1 mRNA upstream 763325 25144818 ~ 25170260 (-) False LOC113538330
XM_026933502.2 mRNA upstream 1179297 25560790 ~ 25564089 (-) True pou4f1
XM_034310133.1 mRNA upstream 1188528 25570021 ~ 25580542 (-) True obi1
XM_026933140.2 mRNA upstream 1188528 25570021 ~ 25579467 (-) False obi1
XR_003403848.2 other downstream 698152 23616157 ~ 23632013 (-) False uap1
XR_004580160.1 other downstream 2798737 21463861 ~ 21531428 (-) False raver2
XR_004577321.1 other upstream 1519237 25900730 ~ 25907994 (-) False LOC113538393
XR_003403851.2 other upstream 1699656 26081149 ~ 26105456 (-) False slc19a1
TU39875 other upstream 2249336 26630829 ~ 26638504 (-) True ecrg4b
TU39865 other upstream 2258340 26639833 ~ 26649379 (-) False si:ch73-23l24.1
TU39866 other upstream 2258340 26639833 ~ 26649379 (-) False si:ch73-23l24.1

Expression Profile