RNA id: XM_026933502.2


Basic Information

Item Value
RNA id XM_026933502.2
length 2982
RNA type mRNA
GC content 0.46
exon number 2
gene id pou4f1
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 25560790 ~ 25564089 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACACTGCAAGGCATCTCCTCTCTGCACCGGGCTCTCAGATCTCCTAAACTTCACACTACCGCGACCTGagactgcacaacacacacacacatacacacacacacacacagacacacacacagacacacacacacacacaaacaaacaccgCAGCCCTGGACCTGGAGCAGCATCGTCCACTTTAtttacatctttatttatttatgttctcTTAGCCTGCAttagtttttattcaaattattattatttttgtttatttatttcttctcctctgctgtgcactttatttttttcgACGAAGCGGGACGCttttgcagaaaaacaaaacagaaacaccATGATGTCCATGAACAGCAAACAGCCTCATTTCGCCATGCACCCGAGTTTACCCGAGCACAAATACACCACTTTACACTCGAGCTCGGAAGCGATCCGGAGAGCGTGTCTGCAAACTCcacagCTACAGAGCAACATCTTCGCGAGCCTGGATGAGACCCTGCTGGCGCGCGCCGAGGCCCTGGCGGCCGTGGACATGGCGGTGTCGCAGGGCAAAGCGCACCCGTTCAAACCCGACGCCACGTACCACACGATGAACAGCGTGCCGTGCTCGTCCACGTCCACGGTGCCCATCGCGCCGCCGCACCACccgcaccaccaccaccatcaccaccaccaccagaaCCTGGAACCACCGGACCTGATGGAGCACATCAGCTCGCCTTCACTCACCCTGATGAGCAGCGCGCACGAGGCCGGCGGAGGAGCGGGAGGAGGCGgcggtggaggaggtggaggcggcggaggaggtggtggaggcGGCGGATTGATCTCCACCTCGGCGCATCCGCACTCACACATGCACGGCTTGAGCCATCTCTCGCACCAGGCCGCTATGAACATCAACTCCCCGCTCGGACACCACCACCATCCTCACCACCCTCATCCGGGGCTTTTACCCAGCCACCCCGGCAGCGCTCAGGGCGCCTCGGGCCTAATTCCCAACGGACTTCCGTCCCTGCCCGACTCGGATACGGACCCGCGCGAGCTCGAGGCGTTCGCGGAGCGCTTTAAACAACGGCGGATCAAACTCGGTGTCACTCAGGCGGACGTGGGCAGCGCCCTGGCCAACCTGAAAATCCCCGGCGTGGGCTCGCTCAGTCAGAGCACCATATGTAGGTTCGAGTCTCTAACACTATCACACAACAACATGATTGCGCTCAAGCCCATTCTCCAGGCCTGGCTGGAGGAGGCCGAGGGCGCGCAGCGCGAGAAAACGAACAAACCTGAGCTGTTTAACGGCGCCGAGAAGAAGCGCAAGCGCACGTCCATCGCCGCGCCCGAGAAGCGCTCTCTCGAGGCGTACTTCGCCGTTCAGCCGCGACCCTCCAGCGAGAAAATCGCGGCCATCGCCGAGAAACTGGACCTCAAAAAGAACGTGGTGCGCGTCTGGTTTTGCAaccaaagacaaaaacagaaacgGCTGAAATTTTCCGCGGcgcactgatgatgatgatgatgatgatagtgatagtgatggtgatgacaatgatgacagtgatgatgacagtgatgatgatgatgatgatgatgaggaggaggaggacatgTTTTGGACCAAGGGATCTACAATCGTGTTTGTAGGTCTGCTGCGGCCCGGTGGGGTTTTTCATGATCAATcagatttattactttattattgtgGATGAGACTTTACGTGACCCTTCTCGCGCCCTGAATTAATTTAAGATGatgatatttatcatttatttatttatatatttattttcccatGATGCTGAAGTATGCAAACTCCAGGTAATCCAGACTTGCGGAGAACACTTAATGCCTTCTTCCCCAAAAACATCGCAAGAACACAGAAATCCGGggttatttatttgctttttttaatttacttttctttcgtttttttttttttttttagaaacacacttttatttgaaatgatgaaatagcCATGGAAGGATTACCTCATACTCTAAACTCGTCGTCCTGTTTTAGTTCTTATCAGCTGATTTAGTTAGATAATTATATTTAcggattataatttatttcctggcttgtgtgtttgtaaTCGGGAGctttaaaaagtcatttctgATGGAAAAGCAGaggctaaatttaaaaaagaaaaaaagaaaaagagagagaggatacaAAATCTCTGTTTAATGGTTGAGTCTGTAATAGAGGTGGCAACCACCACTTggattagtttgtttttttttatattgcactgaaatacagtatataatttcttaaaattattattattattattattattattattattattcgaaTTGGTTAGCTCTATTGAAATgctttttgtatatataaacatacagacaCCTGCTCACCATGGATTcccattttttcctcttttttttcaaatttatttatttaatttattaatctgtCACTGGTATTATTTTATGATGGCTCTATAACAACTTCGCATGTGTCAGACGATCACATTTCCATCCTGATGGAGCAGAAtgaaggataataataataacaagaaaaaaaaactatatataaaattgtcttttttaattaattaatttatttattttgaatttgtacaCTTTGGTTTGCAGTGCAAACATTCTATGCATTATTAAAGTAATACCGACTGAAGCACTACCGCATTAGAGGACCTGCTGTTAGCCTTGTGGATGGTGTCACTGTttaatgccacacacacacacacacacacacacacacactgttcgtTTTGTCGTGTTAtaattgtccaaaaaaaaagaagagaaagttGTGTAAGTAGTGATTTATTTTGTGCACATATGTTTACAGACGGCGGCCAAGGTGAGTCGCGCGCGCGCTCTGCGTCCCTCTATCtttccacccacccatccatccatctactcatccacccatccacccatccagCCTTCAATCCATCACCCCTTCTGTTTTGTAAAGCCAAATCCACTCCGCGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09366 POU4F, BRN3; POU domain transcription factor, class 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39061 lncRNA downstream 128822 25431758 ~ 25431968 (-) True G33166
XR_003403852.2 lncRNA downstream 320437 25206722 ~ 25240353 (-) True LOC113538494
TU38817 lncRNA downstream 736356 24824235 ~ 24824434 (-) True G32923
XR_004579510.1 lncRNA downstream 761365 24794547 ~ 24799425 (-) True LOC117599074
TU38795 lncRNA downstream 792780 24767808 ~ 24768010 (-) True G32901
XR_004579559.1 lncRNA upstream 94226 25658315 ~ 25661964 (-) True LOC117599130
TU39435 lncRNA upstream 96824 25660913 ~ 25661691 (-) False LOC117599130
TU39470 lncRNA upstream 146142 25710231 ~ 25784880 (-) True G33508
TU39472 lncRNA upstream 168209 25732298 ~ 25738774 (-) False nbeal1
TU39514 lncRNA upstream 273209 25837298 ~ 25843332 (-) True G33538
XM_026933302.2 mRNA downstream 390530 24968550 ~ 25170260 (-) True LOC113538330
XM_034313653.1 mRNA downstream 390530 25144818 ~ 25170260 (-) False LOC113538330
XM_026933450.2 mRNA downstream 1179297 24330165 ~ 24381493 (-) True brinp3a.2
XM_034310289.1 mRNA downstream 1430764 24077383 ~ 24130026 (-) False brinp3a.1
XM_026933099.2 mRNA downstream 1430764 24077383 ~ 24130026 (-) True brinp3a.1
XM_034310133.1 mRNA upstream 5932 25570021 ~ 25580542 (-) True obi1
XM_026933140.2 mRNA upstream 5932 25570021 ~ 25579467 (-) False obi1
XM_026933608.2 mRNA upstream 97911 25662000 ~ 25674496 (-) False rbm26
XM_026933607.2 mRNA upstream 97911 25662000 ~ 25674495 (-) True rbm26
XM_034311460.1 mRNA upstream 116001 25680090 ~ 25738817 (-) True nbeal1
XR_003403848.2 other downstream 1928777 23616157 ~ 23632013 (-) False uap1
XR_004580160.1 other downstream 4029362 21463861 ~ 21531428 (-) False raver2
XR_004577321.1 other upstream 336641 25900730 ~ 25907994 (-) False LOC113538393
XR_003403851.2 other upstream 517060 26081149 ~ 26105456 (-) False slc19a1
TU39875 other upstream 1066740 26630829 ~ 26638504 (-) True ecrg4b
TU39865 other upstream 1075744 26639833 ~ 26649379 (-) False si:ch73-23l24.1
TU39866 other upstream 1075744 26639833 ~ 26649379 (-) False si:ch73-23l24.1

Expression Profile