RNA id: XM_026933524.2


Basic Information

Item Value
RNA id XM_026933524.2
length 2254
RNA type mRNA
GC content 0.38
exon number 5
gene id rgs5a
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 23852014 ~ 23866617 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAACAGAGCGGAGCACAGAGACAAATtcaaaaaggaaaaggaatCGTTCATGGTGGTGGATTAACCCTGTGAAGCCAGTACTAAAGAGTCCAAACCATGTGTAAAGGATTAGCTGCCCTGCCTCAGACATGTCTGGAGAGGGCTAAAGGGATCAAGACTAAGTTGGGAACTCTGCTCCAGAAGCCAGAGAATGCCATTGACCTCATCATCCCATACCCTGAAAAGCCTGAGAAGAAAACAGAGAAGCATCAGAAGCCAACCCCTGAAGAGGCTGCCCAGTGGCGTGAGTCTCTGGACCGAGTCCTCATCAACAGCTATGGCCTTGCTACATTCAGGAGCTTCCTGAGATCTGAGTTCAGCGAGGAGAATGTTGAGTTCTGGTTGGCTTGTGAGGATTTTAAGAAGACCAAGTCTCCACTGAAAATGGCCACCAAGGCTAAGAAGATTTATGAAGACTTCATTCAGACTGGTGGACACAAAGAGGTGAACATTGACCATTTCACGAAAGGCGTGACTCTGAGGAACCTGGTTGACCTTTCCGCTGCCACTTTTGACCTGGCTCAGAGCCGCATCTACACCCTGATGGAGAAGGATTCCTTCGGCCGTTTCCTTAGATCTGAGCAGTACCTAGAGCTCCTCAAGTAAACACATTTATCCAGCTGTAGGgagacaaaaataattattttagaaaTCCACCTTTACAAATCCAATTAttatttgttgattattttactttacagaTAATGTAGGAGCCTCAAAATCAATCTGACTAGAAAAATGATCTTGCAGTCTTCCAgaatttggaaaataaatcCAAATTGTCTCCCTGCAGCTTTGCTAAGAACTTGTTGATGACCAAAAGAcctattatttttgtcttaaaaaatGGCAAgacattacattaaacattCAAATTGTATTCATGCATAATGCCAAAGTTTTCAAAGTACTGTCCACAGTTTGTTTTGCATAACCTGTTAGCTGGGATGGAATTTTTGGTTCCCTGTCTACTAAATAAATTGGAAAATCCTAGTCAGACTAATTCCCACTTGTAATTCATTAGACTAGACAAGTGGCTCATGTTTGTGAAGAGAACATCCTGGCCTCTGAGGTGCAATTTGGAGAAGTATCGGAGCACAGTGTTCATCTGTCTGCCGTGAAGTGAGATACGGCTGGTGTGGGGACGGGAGCGAATGACGGGTGCTTTTTCTTGGAAACATCCATGTTAATGTTAACGCTCACATGTAAAAGTGATGGGGAGTTGGGGGGAGGGGGAATACACACTTAAACCCTGAAAGGCCCTTCATAATTTACAGTAAAAGAAGAGTGGGACATGTTTAAATGCACCGAGTCCCTGGGAAAAGCCAGAGTGGAGACTTGTTGTGGTGTGTACGTTGCTAAGATGGGAAAATCAAGTAGGAGTGGTTCTCCATAAAGCAttggaaaactttttttcataCAGAAGGACAGCTTTCCCAAGGAAGTATAAGGGATAATCACAAAAATTACTATAAGCCTATCCTGATTTAATCAAAATCCAATGATGAGTGTCTTTCAAGACAAgcactgaaaatatatataattattattactattattgtcattatgtcattattaatgactGTCTTTTTCCTAAAATCTTGCATGCCCTTGACATGAGCAGCTAATCTTCATTATAGACACGTTGCCTAACATTTGTCAAGTACATGGTATCCATATGTATGAAAATATTTCCCTTATTAAACTTTGCATGTGTGAATCTCACCATATGCACGTACAGTATACtattgcatgttttgttttttcccctattttattgttcagtaaaaacatatatagtatatagcaTTATATGCAGTAATAGGTGGTCCATAAGTCCTTATTGTTATGCCACATAAACTAAAATATTACAACACTGCAGGTCAGAAAACATGACTTattctaaattttaaaaatagaaaatatctATTGATTTTGAAGCATTGGTagtgaattttctttttttttcccctcacatcAAAATTAGATCAAACTAAATTCAAACTGCTGCTAAGGACTTATAGGAGTACCtcatatttaaaagtaaatctaagcaaatacatgtatatgtacTACTGTAGCCACACATAAAATGTATAAGTGCATTAAAGTTGTGAACACCTATTTATTTTTGagatgtaaataatttatagcTATTTGGTTTTCAGTCATTTACAATTTCTTTTCTGTGAATACACATGGTGAGGAGTCTGAA

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38487 lncRNA downstream 168328 23678782 ~ 23683686 (-) True G32629
TU38121 lncRNA downstream 626625 23225082 ~ 23225389 (-) False dmrt2b
TU38041 lncRNA downstream 809252 23042531 ~ 23042762 (-) True G32244
XR_003403825.2 lncRNA downstream 856825 22990447 ~ 22995189 (-) True LOC113538262
TU37952 lncRNA downstream 1066324 22711213 ~ 22785690 (-) True G32157
TU38557 lncRNA upstream 153508 24020125 ~ 24020779 (-) True G32686
TU38651 lncRNA upstream 351876 24218493 ~ 24218937 (-) True G32777
TU38655 lncRNA upstream 392689 24259306 ~ 24259855 (-) True G32781
TU38717 lncRNA upstream 616046 24482663 ~ 24482990 (-) True G32840
TU38731 lncRNA upstream 706565 24573182 ~ 24576092 (-) True G32852
XM_026933217.2 mRNA downstream 49950 23683831 ~ 23802064 (-) True nos1apa
XM_026933216.2 mRNA downstream 49955 23671018 ~ 23802059 (-) False nos1apa
XM_026933602.2 mRNA downstream 220002 23615454 ~ 23632012 (-) False uap1
XM_026933601.2 mRNA downstream 220002 23615454 ~ 23632012 (-) True uap1
XM_026933562.2 mRNA downstream 239973 23573494 ~ 23612041 (-) False ddr2a
XM_026933475.2 mRNA upstream 20150 23886767 ~ 23888466 (-) True rgs16
XM_026933477.2 mRNA upstream 20155 23886772 ~ 23888466 (-) False rgs16
XM_026933488.2 mRNA upstream 35534 23902151 ~ 23919047 (-) True rgs8
XM_034298073.1 mRNA upstream 35534 23902151 ~ 23913584 (-) False rgs8
XM_034310289.1 mRNA upstream 210766 24077383 ~ 24130026 (-) False brinp3a.1
XR_003403848.2 other downstream 220001 23616157 ~ 23632013 (-) False uap1
XR_004580160.1 other downstream 2320586 21463861 ~ 21531428 (-) False raver2
XR_004577321.1 other upstream 2034113 25900730 ~ 25907994 (-) False LOC113538393
XR_003403851.2 other upstream 2214532 26081149 ~ 26105456 (-) False slc19a1
TU39875 other upstream 2764212 26630829 ~ 26638504 (-) True ecrg4b
TU39865 other upstream 2773216 26639833 ~ 26649379 (-) False si:ch73-23l24.1
TU39866 other upstream 2773216 26639833 ~ 26649379 (-) False si:ch73-23l24.1

Expression Profile