RNA id: XM_026935299.2


Basic Information

Item Value
RNA id XM_026935299.2
length 2309
RNA type mRNA
GC content 0.41
exon number 1
gene id zgc:153311
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20884525 ~ 20886833 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTTACccactctctctcacctcctccttCCATCTCCTCCTACTTGTGTTTTACCTCTCAAGTTAAGATGATGTGTACAGTTTTGAGTGGAAACTGACGGACTGTGAAGTAGCTGGAGTGGTCAGCACTAATTGGCTCAAAGACTCTTGAGGACCCTCTCTCTCCTCAAACGAGAGCTCCAGAAGTTCTACCCAGACGTGAGGGCCAAGGAGTGCCATGTCGAATCCGTGTTCCAGCATTCTGGAGCTGCTGGGTATGATCGTGGGGGTAGGGGCATGGATCTGCTCGCTTGCTGCTACACTCATGCCCAGTTGGTTGACCCTCACCACTGAGCTGCTGGCCGTGGAGAGCTATGAATTGGGCCTGTGGGAGACCTGTGTGGTGCAGGAGGGGTCAGCCACCGAGTGTCGTCCCTTCGAAACCCTGCTGGGTCTGTCGCACAACCAAACACTGGCACGCATCTGCATGTGCATAGCACACGCCATAGCACTCCTGGGCCTCCTGATCGCTGCCCCAGGTCTGAGACTGGTGAAAAGTTGTGAGGGGTCGGCGGGACGGCGGGTGAAGCGCGGCATCAAGATCACGGCAGGAGTGTTGATCCTGATAGCTGGAACCCTCATACTCTTTCCTGTTTCCAAAATCGCCCATGAGACCGTTTTGAAGTTCCATGATCACTCATTGCCTCATACTGTGCCTCGCCCGGAGTTTGGCGACGCGTTGTTCATCGGCTGGGCTGCAGGTTTTTTTCATGTTGTCTCTGCAGTGTTGTTCTTCGTCTCCTGTTGTGGTTCAGAAGTGAACGAGATGCACATAGTGTACCATCACGAGGAAAAGCTTCAGCCTGTGAACGGCTTGTCCAAAAAGCGTGTAGAGTACGTTTAGCAGGAACTAGTAAGCTTTCAGAGTGTTTCTATTGTGACAGGACATATGAACTGATGAATTTCCCTCTATAATTTACActgctctgttttttctttGGTCACTGCAGTCCAACAGGCAATTTGTTTGATTAAATCTGCTGGTATGTGCTAATATTTTTCACTTTGCTCCTATTAGTAATAGGTTTCTATTATCAGCTGATGTGAATTAATACTCTTAAACTGCTTAAACATATGTACACAATCTTTTTTCCAAGagatattttctgattttcaaTCTAGCAGTGCATAGTGTGCaacagtgtatgtatgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatcagaatgATTTGGGGATATATTTAGATTGTGCAATAGTAtagtttcatatttacattgaTATATTGTTTGAGTGTATTTCTGTAGATATTGTCATATACATagatattatacattttattagttTACAATAGTAATAAAGTGTCTACAAGAAAAACTTGCTGCTCGTTGGGAAAACGAGCTCTTAAGAAACCTCTTGATGCCACTTACAAATGCAGCTCTTGTTGTTAGATTGTTAAGTGACTGGGGAAAAAATAGCCCCTGACAAACATCTGCTGTTGATccataataacacaataaacaaaaagaaaatggatcACTAAAAGGCATATTTCTGTTGAATGCATGCATGTCACTTGGTAATCTCTGTGTGTAAGAAACGTAAGGAGTAGCTTTTGGCAGGGTTTGGAAGAAGGTTTAGGGCGTGCTTGAGTCTAATTGCATCTGATGGCCACTCCATATCAGCAAGTGGATTAAGCTGTGTTTAATGAAGCCCCTAAGGAACAGTATGTCCTAATGAGGAATGCCAAACAGAATCACCCCTCTGCCTCCTCTTTATGTTGATTACTCTGATCTGACCTGGTTAAAGGTACAACTGGCCAGTTtatcctggaaaaaaaaaactccaaaaaacTGACTCAGCAAAGAGACATTTGTGTCATAAGAGATAATCATTTTTTCACACTCTTGTCTTCACTAGgctttaaacaaaacacaatatCCTTAAatgtgagattaaaaaaaatgatagcagAATATCAGTGCAATGATGTACTAGAAATGCTTGTGTATGAATTAAACAAGAgtcaatatgattttttttgtttgtttttcatagCCTGAAACATACTTAAATTCAAAGAGATAAGAGATAAGTGAGCAACAATTTTGTATTACTCACACTGAAAGCTTGAAGGAAACATCTGTCTCAACAAGCGGATAATGAGTCTGTATCAAAATGTTTGTCTCCTTACTGGTAGTGTGTCATTATGATCTTTTGGGGATCATATTTTGCCCAATAAAGCTTTTGCTActcattcaaataaaaa

Function

GO:

id name namespace
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36467 lncRNA downstream 227142 20655352 ~ 20657383 (-) True G30899
TU36466 lncRNA downstream 228005 20575961 ~ 20656520 (-) False G30899
TU36446 lncRNA downstream 335888 20512732 ~ 20548637 (-) False G30879
TU36444 lncRNA downstream 350404 20512732 ~ 20534121 (-) True G30879
TU36443 lncRNA downstream 367667 20509191 ~ 20516858 (-) False G30879
TU36669 lncRNA upstream 73339 20960172 ~ 20960391 (-) True G31070
TU36702 lncRNA upstream 176061 21062894 ~ 21065738 (-) True G31094
TU36880 lncRNA upstream 394531 21281364 ~ 21283225 (-) False lepr
TU36922 lncRNA upstream 497576 21384409 ~ 21385276 (-) True G31298
TU37101 lncRNA upstream 502644 21389477 ~ 21412173 (-) True G31454
XM_034311575.1 mRNA downstream 69705 20683547 ~ 20814820 (-) False lrrc7
XM_034311566.1 mRNA downstream 69705 20683547 ~ 20814820 (-) True lrrc7
XM_026921598.2 mRNA downstream 114114 20683547 ~ 20770411 (-) False lrrc7
XM_026921363.2 mRNA downstream 114114 20683547 ~ 20770411 (-) False lrrc7
XM_026921445.2 mRNA downstream 114114 20683547 ~ 20770411 (-) False lrrc7
XM_026928304.2 mRNA upstream 76556 20963389 ~ 20978637 (-) True lurap1
XM_026918081.2 mRNA upstream 102852 20989685 ~ 20994441 (-) True ttc4
XM_026918070.2 mRNA upstream 109255 20996088 ~ 20999389 (-) True pars2
XM_026918061.2 mRNA upstream 109255 20996088 ~ 20999388 (-) False pars2
XM_034313472.1 mRNA upstream 131093 21017926 ~ 21084763 (-) False sgip1a
trnap-cgg_1 other downstream 1498012 19386442 ~ 19386513 (-) True trnap-cgg_1
trnap-ugg_1 other downstream 1504013 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-ugg other downstream 2067327 18817127 ~ 18817198 (-) True trnap-ugg
trnag-ucc other downstream 2068195 18816259 ~ 18816330 (-) True trnag-ucc
TU34886 other downstream 2077775 18794032 ~ 18806750 (-) False LOC113537624
XR_004580158.1 other upstream 577028 21463861 ~ 21531428 (-) False raver2
XR_004580163.1 other upstream 577028 21463861 ~ 21531428 (-) False raver2
XR_004580160.1 other upstream 577028 21463861 ~ 21531428 (-) False raver2
XR_004580156.1 other upstream 577028 21463861 ~ 21531428 (-) False raver2
XR_004580159.1 other upstream 577028 21463861 ~ 21531428 (-) False raver2

Expression Profile