Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026938369.2 |
| length | 692 |
| RNA type | mRNA |
| GC content | 0.37 |
| exon number | 4 |
| gene id | LOC113541386 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 16394241 ~ 16398401 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:2001014 | regulation of skeletal muscle cell differentiation | biological_process |
| GO:0002082 | regulation of oxidative phosphorylation | biological_process |
| GO:0050796 | regulation of insulin secretion | biological_process |
| GO:0005743 | mitochondrial inner membrane | cellular_component |
| GO:0005758 | mitochondrial intermembrane space | cellular_component |
| GO:0042645 | mitochondrial nucleoid | cellular_component |
| id | description |
|---|---|
| K17682 | MNF1; mitochondrial nucleoid factor 1 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU33626 | lncRNA | downstream | 34720 | 16358139 ~ 16359521 (-) | True | G28508 |
| TU33633 | lncRNA | downstream | 64820 | 16329108 ~ 16329421 (-) | True | G28515 |
| TU33473 | lncRNA | downstream | 127486 | 16266556 ~ 16266755 (-) | True | G28385 |
| TU33472 | lncRNA | downstream | 129081 | 16264924 ~ 16265160 (-) | True | G28384 |
| TU33471 | lncRNA | downstream | 129999 | 16263614 ~ 16264242 (-) | True | G28383 |
| TU33656 | lncRNA | upstream | 63701 | 16462102 ~ 16463933 (-) | True | G28537 |
| TU33657 | lncRNA | upstream | 63701 | 16462102 ~ 16489915 (-) | False | G28537 |
| TU33936 | lncRNA | upstream | 172389 | 16570790 ~ 16571524 (-) | True | G28779 |
| TU34351 | lncRNA | upstream | 655687 | 17054088 ~ 17054656 (-) | True | G29119 |
| TU34418 | lncRNA | upstream | 995057 | 17393458 ~ 17394467 (-) | True | G29167 |
| XM_026912883.2 | mRNA | downstream | 8021 | 16372782 ~ 16386220 (-) | True | frs3 |
| XM_034310265.1 | mRNA | downstream | 14259 | 16372782 ~ 16379982 (-) | False | frs3 |
| XM_026921515.2 | mRNA | downstream | 40100 | 16346585 ~ 16354141 (-) | True | eno1b |
| XM_026921526.2 | mRNA | downstream | 40670 | 16346585 ~ 16353571 (-) | False | eno1b |
| XM_034300908.1 | mRNA | downstream | 47961 | 16327871 ~ 16346280 (-) | False | rereb |
| XM_034310450.1 | mRNA | upstream | 2548 | 16400949 ~ 16406482 (-) | False | si:ch73-15b2.5 |
| XM_026938250.2 | mRNA | upstream | 2548 | 16400949 ~ 16406482 (-) | True | si:ch73-15b2.5 |
| XM_026938056.2 | mRNA | upstream | 8175 | 16406576 ~ 16416819 (-) | True | ddi2 |
| XM_026938137.2 | mRNA | upstream | 11127 | 16409528 ~ 16416819 (-) | False | ddi2 |
| XM_026927117.2 | mRNA | upstream | 20859 | 16419260 ~ 16430096 (-) | True | prkcda |
| TU32920 | other | downstream | 925012 | 15461950 ~ 15469229 (-) | False | oxtr |
| TU32916 | other | downstream | 933240 | 15456635 ~ 15461001 (-) | True | G27925 |
| TU32819 | other | downstream | 1095222 | 15297309 ~ 15299019 (-) | True | G27843 |
| XR_003403256.2 | other | downstream | 1518251 | 14872948 ~ 14875990 (-) | False | pxmp4 |
| TU34409 | other | upstream | 874554 | 17272955 ~ 17280173 (-) | True | G29158 |
| XR_004577384.1 | other | upstream | 1115311 | 17513712 ~ 17529315 (-) | False | si:dkey-44g17.6 |
| TU34529 | other | upstream | 1550756 | 17949157 ~ 17949718 (-) | True | G29263 |
| TU34546 | other | upstream | 1672586 | 18070987 ~ 18072909 (-) | True | G29279 |
| trnae-cuc_6 | other | upstream | 2178823 | 18577224 ~ 18577295 (-) | True | trnae-cuc_6 |
