RNA id: XM_026940250.2


Basic Information

Item Value
RNA id XM_026940250.2
length 1726
RNA type mRNA
GC content 0.45
exon number 5
gene id gcnt7
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 10335393 ~ 10339327 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagagagagagagagaggcatgaCTAGTTGCTAGGCAAGCTCAGCCTCTAAATCATTATGCCTCTGGTGAGCTCTCTCTCGTTGTATCACATGGGGAATGTAGCTGAGCAGCCAAGCAGCCAGTCAAACAGAGAAGAGAGGATAGCACACTGATTACAAAGCAGCAGAAACAAGAGCTTCAATAACACCACTATctgcatgcagtgtgtgtgtcggcAGCTCTTACAGCACACACCAGCTAACTAAATGGCACTACAGCAGGCATGACTCTCCTCTGCCTCAGGCAGCATGTATTTAGCTGAGGTCACCGTGGAGCAGACTTTTCTGGACGTCAGAGTTATTTAATGGTTAACCTTATTTAATGAGAGGACCAGACTCTGCTGCAGCTAAAAGACTAGTCTGCTTGATGCTGGATTATGCTCCAGCTTGAGAGTGCCAAGTGGAGTTTTCTTCTATGCCTTGGAATCAGCATCCTGATCTGCTCAGTCATTTATCTTAAGGGTAAACCTTCTTATGCTCCAAGGCCACTACACCGCACCTTGAGCTGCCGTCCATTCCCTGAAAGCTGTAAAGCTTTACCACCCACTTCCTCTTACACAAGATGGGAAAGAACAGAATGTCAGGAGCTGAGCTTTAACAATCCACTCAACTGCTCCCGTATACAATCTGAGCTTCACTTTATTATGGAGACCCTGAGCAAAGAAGAGGAGGACTACCCTCTGGCCTTCATCATCACTATCCACAAAGACCTGGAGATGTTTGTGCGTCTGCTCAGAGCCATCTATGCACCACACAATATCTACTGCATTCACATAGATGCCAAAGCTCCAGAAGACTACAGAGCTGACATTAATTGCATGGAGGACCTGGTGAGATCTCCAGTCAAATGGCAAAGGGTGATAAACCTGTGTGGCCAGGATTTCCCTGTTCAGAGCAACCTGGAGCTGGTCCGATATATGCAAGATGCAGAATGGAGAGATAATAATATGACTCCAGGCGTAAAACAGCCAAAGGACATGCAACACAGGACTCAAATACAGCATATAGAAGTTAAAGGTGAGCAGGTGGCCTCCATGGGTCAAGGTTACCAAAAGACTCCCCCTCCACACAACCTGACGATCTACTTTGGTACAGCCTACTATAGTCTGCAAAGAGCATTCGTGGAATATGTGCTCACCAGCTCAGTGGCCAAAGACCTGTTGGAGTGGTCCAAGGATACCTACAGCCCCGATGAGCATTACTGGGTAACCCTTAACCATGTGGAAGATGCCCCTGGCAGCAATGTAAACGCTGGCTGGGAGGGTAACATTCGAGCCATTAAATGGAAAGACCAAGAAGGAACAGCACATCAAGGCTGTAATGGACATTATGTCAGGGATATCTGCATCTACAATGTTGAGGATTTACCCTGGATAATTGAGAAGAACAGCATGTTTGCTAACAAGTTTGAGAGCAGTAGTtttcctgaagctcttgactgcCTGGAACAGTGGCACAGGCACAAAGTCCTTCAGCAGGCAACAGTACCCATTCAGATATCATGGCAACTTGCAACAGAGGTCAATATTAGTAGTGCCACAGTAGCaggctgaattaaaaaaaagccaaagagATAAGGTCACAGTTGAGATAGTTAATTCTTAAACTAAATTATCCACACAATTCAACATGAAATGATTAATCCATGAAACATGGATACTGAGCAGagacttttactttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29196 lncRNA downstream 164218 10170970 ~ 10171175 (-) True G24623
TU29193 lncRNA downstream 166924 10168211 ~ 10168469 (-) True G24620
TU29190 lncRNA downstream 174152 10161032 ~ 10161241 (-) True G24617
TU29184 lncRNA downstream 183228 10151817 ~ 10152165 (-) True G24611
TU29143 lncRNA downstream 396350 9938256 ~ 9939043 (-) True G24572
TU29745 lncRNA upstream 589524 10928851 ~ 10934133 (-) False itcha
XR_003403497.2 lncRNA upstream 627369 10966696 ~ 10984007 (-) True LOC113534445
TU29800 lncRNA upstream 682196 11021523 ~ 11021725 (-) True G25184
TU29801 lncRNA upstream 683112 11022439 ~ 11022641 (-) True G25185
XR_004579523.1 lncRNA upstream 918437 11257764 ~ 11262304 (-) True LOC117599085
XM_026925110.2 mRNA downstream 76174 10241254 ~ 10259219 (-) True eya2
XM_026925117.2 mRNA downstream 76175 10241254 ~ 10259218 (-) False eya2
XM_026923241.2 mRNA downstream 116012 10213908 ~ 10219381 (-) True LOC113532087
XM_026924480.2 mRNA downstream 137002 10044762 ~ 10198391 (-) False slc12a5a
XM_034299696.1 mRNA upstream 213584 10552911 ~ 10685886 (-) True LOC113532783
XM_034299692.1 mRNA upstream 215106 10554433 ~ 10743445 (-) False LOC113532783
XM_034299687.1 mRNA upstream 215106 10554433 ~ 10743445 (-) False LOC113532783
XM_026924421.2 mRNA upstream 215106 10554433 ~ 10743436 (-) False LOC113532783
XM_034299689.1 mRNA upstream 215106 10554433 ~ 10720376 (-) False LOC113532783
TU29080 other downstream 467115 9863367 ~ 9868278 (-) False G24516
TU28828 other downstream 616423 9715527 ~ 9718970 (-) False tnnt2b
TU28673 other downstream 893583 9435563 ~ 9441810 (-) False tusc2a
TU28035 other downstream 1851212 8481051 ~ 8484181 (-) False tcta
TU29342 other upstream 149966 10489293 ~ 10490295 (-) True G24760
XR_003403751.2 other upstream 2899377 13238704 ~ 13238806 (-) True LOC113537313
TU31648 other upstream 3159278 13498605 ~ 13499984 (-) False slc5a8l
TU31814 other upstream 3292935 13632262 ~ 13634652 (-) False rps26l
XR_004579719.1 other upstream 3534387 13873714 ~ 13907189 (-) False lhfpl4a

Expression Profile