Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026943221.2 |
| length | 1178 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 7 |
| gene id | med8 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 17186645 ~ 17191459 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0016567 | protein ubiquitination | biological_process |
| GO:0016592 | mediator complex | cellular_component |
| id | description |
|---|---|
| K15129 | MED8; mediator of RNA polymerase II transcription subunit 8 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU34351 | lncRNA | downstream | 131989 | 17054088 ~ 17054656 (-) | True | G29119 |
| TU33936 | lncRNA | downstream | 615121 | 16570790 ~ 16571524 (-) | True | G28779 |
| TU33657 | lncRNA | downstream | 696730 | 16462102 ~ 16489915 (-) | False | G28537 |
| TU33656 | lncRNA | downstream | 722712 | 16462102 ~ 16463933 (-) | True | G28537 |
| TU33626 | lncRNA | downstream | 827124 | 16358139 ~ 16359521 (-) | True | G28508 |
| TU34418 | lncRNA | upstream | 201999 | 17393458 ~ 17394467 (-) | True | G29167 |
| TU34417 | lncRNA | upstream | 203307 | 17394766 ~ 17396199 (-) | True | G29166 |
| TU34423 | lncRNA | upstream | 232412 | 17423871 ~ 17429778 (-) | True | LOC113528975 |
| XR_003403011.2 | lncRNA | upstream | 234145 | 17425604 ~ 17429486 (-) | False | LOC113528975 |
| XR_003403015.2 | lncRNA | upstream | 234145 | 17425604 ~ 17429480 (-) | False | LOC113528975 |
| XM_034313328.1 | mRNA | downstream | 17293 | 17066355 ~ 17169352 (-) | False | szt2 |
| XM_034313340.1 | mRNA | downstream | 17293 | 17066355 ~ 17169352 (-) | False | szt2 |
| XM_034313333.1 | mRNA | downstream | 17293 | 17066355 ~ 17169352 (-) | False | szt2 |
| XM_034313342.1 | mRNA | downstream | 17293 | 17066355 ~ 17169352 (-) | False | szt2 |
| XM_034313338.1 | mRNA | downstream | 17293 | 17066355 ~ 17169352 (-) | False | szt2 |
| XM_026930064.2 | mRNA | upstream | 6530 | 17197989 ~ 17203249 (-) | True | LOC113536221 |
| XM_026917735.2 | mRNA | upstream | 29125 | 17220584 ~ 17294005 (-) | False | pbx1b |
| XM_026917727.2 | mRNA | upstream | 29125 | 17220584 ~ 17294005 (-) | True | pbx1b |
| XM_034312419.1 | mRNA | upstream | 247181 | 17438640 ~ 17462625 (-) | True | sec16b |
| XM_026917852.2 | mRNA | upstream | 281987 | 17473446 ~ 17529301 (-) | False | si:dkey-44g17.6 |
| TU32920 | other | downstream | 1717416 | 15461950 ~ 15469229 (-) | False | oxtr |
| TU32916 | other | downstream | 1725644 | 15456635 ~ 15461001 (-) | True | G27925 |
| TU32819 | other | downstream | 1887626 | 15297309 ~ 15299019 (-) | True | G27843 |
| XR_003403256.2 | other | downstream | 2310655 | 14872948 ~ 14875990 (-) | False | pxmp4 |
| TU34409 | other | upstream | 81496 | 17272955 ~ 17280173 (-) | True | G29158 |
| XR_004577384.1 | other | upstream | 322253 | 17513712 ~ 17529315 (-) | False | si:dkey-44g17.6 |
| TU34529 | other | upstream | 757698 | 17949157 ~ 17949718 (-) | True | G29263 |
| TU34546 | other | upstream | 879528 | 18070987 ~ 18072909 (-) | True | G29279 |
| trnae-cuc_6 | other | upstream | 1385765 | 18577224 ~ 18577295 (-) | True | trnae-cuc_6 |
