RNA id: XM_034300500.1


Basic Information

Item Value
RNA id XM_034300500.1
length 972
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC113528309
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 17543676 ~ 17547134 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATACCGTCAGTTTAAACCAGacatattttagcatttaaaatatattagcaTAAAGTATAATTAAGTATAATTAATAGAAACCTGAGTAATCTTATGCCTCTCTGATTTATCAAACACCAAATGAACCTGCAGAAGAACTGAGAGACAAACATGAGCCGCAAGCAAGAAGACTGCTACTTCTTCTTTAACTCCACATGCACCAAGGGGGATCGTTGCCCTTTCCGGCACTGTGAAGCTGCCAAGGGCAGCAAGACAGTGTGCAAATTCTGGCTGCAGAGCCGCTGCTTAAACAAGGCATGCAGATTTCGGCACATGGACATCAAGAAAAACCGCAGAGAAGTTCAGTGCTACTGGGAAAAGCAGCCAGGCGGTTGCCGAAAGCAggactgcacctttaaacaccAGAAGCCACGGACCATCAGACGGCTTCCTGTTCTCCAGGCCAAAAAATCTCTAGCTTCTGAGAAATGGAATGAAAATCTATCACCTTCTGATGTGACACCTGGCCAGAAGAAGAAACACTCAGGGAGCTTCTGCTCGGCTGATGCTGAGCGACTCCACTGCAAATGTGTTAAGAAAAACCAGCCAGACCAATGCAGAAAACAGGACTGCAACTTTAAGCCTGAGAAGTCCATCAGACAGCATATTGTTGTCCCAGCCAAAGACGATGAGATCGACGTCGTTATCAAAGCCCTTGAGGAGCTTAAGCTGGAGGACAGTGTGAACACCCATTTAAGAACAGCTGGGTCTCCTGCTTCTGAGAACTTCAATGAAAGTTTATCAGTAAAACAGACACCTTGTAATGTGAGACCTGGCAGGAAGAGAAAGACTGCATGGAGCGTCTGCTCGAATGATGAACCACCCTGCAAGCGTGCTAAGTTTCACCATCTATAACCCAGGAAAAGCAACATCCCCATTTTCCTGATTCCTGGACCATCTGCCTTAAGACgaatgaatacaaataaaactgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34442 lncRNA downstream 14472 17472330 ~ 17529204 (-) True si:dkey-44g17.6
TU34457 lncRNA downstream 32221 17487361 ~ 17511455 (-) True G29196
TU34432 lncRNA downstream 75519 17454285 ~ 17468157 (-) True G29176
TU34426 lncRNA downstream 109508 17433453 ~ 17434168 (-) True G29174
XR_003403015.2 lncRNA downstream 114196 17425604 ~ 17429480 (-) False LOC113528975
TU34475 lncRNA upstream 90193 17637327 ~ 17638017 (-) True G29213
TU34488 lncRNA upstream 153627 17700761 ~ 17714365 (-) True G29223
TU34503 lncRNA upstream 237341 17784475 ~ 17842820 (-) False G29237
TU34502 lncRNA upstream 292428 17839562 ~ 17842820 (-) True G29237
TU34596 lncRNA upstream 601094 18148228 ~ 18148749 (-) False zgc:153916
XM_026917804.2 mRNA downstream 3771 17530559 ~ 17539905 (-) True dr1
XM_026917852.2 mRNA downstream 14375 17473446 ~ 17529301 (-) False si:dkey-44g17.6
XM_026917861.2 mRNA downstream 14376 17473446 ~ 17529300 (-) False si:dkey-44g17.6
XM_026917841.2 mRNA downstream 14378 17473446 ~ 17529298 (-) False si:dkey-44g17.6
XM_034312419.1 mRNA downstream 81051 17438640 ~ 17462625 (-) True sec16b
XM_026917713.2 mRNA upstream 3802 17550936 ~ 17567323 (-) True scinla
XM_034298787.1 mRNA upstream 30257 17577391 ~ 17579519 (-) True si:ch73-389b16.1
XM_034313144.1 mRNA upstream 36517 17583651 ~ 17614589 (-) False btbd8
XM_026917595.2 mRNA upstream 36517 17583651 ~ 17614589 (-) False btbd8
XM_026917601.2 mRNA upstream 36517 17583651 ~ 17614589 (-) True btbd8
XR_004577384.1 other downstream 14361 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34409 other downstream 263503 17272955 ~ 17280173 (-) True G29158
TU32920 other downstream 2074447 15461950 ~ 15469229 (-) False oxtr
TU32916 other downstream 2082675 15456635 ~ 15461001 (-) True G27925
TU32819 other downstream 2244657 15297309 ~ 15299019 (-) True G27843
TU34529 other upstream 402023 17949157 ~ 17949718 (-) True G29263
TU34546 other upstream 523853 18070987 ~ 18072909 (-) True G29279
trnae-cuc_6 other upstream 1030090 18577224 ~ 18577295 (-) True trnae-cuc_6
TU34886 other upstream 1246898 18794032 ~ 18806750 (-) False LOC113537624
trnag-ucc other upstream 1269125 18816259 ~ 18816330 (-) True trnag-ucc

Expression Profile