RNA id: XM_034310741.1


Basic Information

Item Value
RNA id XM_034310741.1
length 1615
RNA type mRNA
GC content 0.43
exon number 11
gene id agxta
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18964291 ~ 18969451 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGGTCTTCTGTACAGATTACACACTTCTCCACTTCATTGCTTTTTTCCACTGTCACGTTAGAGGAGCTGCTCTTTGTCTCTTCAGTatgtcatctctctctgtcccaccACCGCAATGTCTCTTACAACCTTTTGTGGTCCCACACCGGCTTCTACTGGGACCGGGACCCTCCAACGTGCCTGCTCGGATTGTGACAGCTGCGTGCCAACCTATGTTAGGACACCTGCACCCTGAGACTATAGAGATTATGGATCAGATAAAGAGTGGGATCCAGTATGCATTTCAGACTCAGAATTGCATGACTCTGGCAGTGAGTGGGCCGGGTCATGCTGCTATGGAGTGTGCTATCTTTAACTCAGTAGAGCCTGGAGATAGTGTGCTCATTGCAGTCAACGGCATCTGGGGGGAGAGAGCTGCTGAAATCGCACAGAGAATAGGTGCCAAAGTGAACACTATTGTAACCTCAGCTGGCAGGTACTtcacaaacagtgaaatagagCAGGCATTAGCCAAATATAAGCCAGTTCTGTTCTTCCTCACACACGGAGAGTCTTCTACAGGAGTGGTGCACCCCATAGATGGCATTGGCGAGCTCTGTCACAAGTATGGTAGTTTGTTCTTGGTTGACTCTGTTGCAGCACTCGGAGGTAGTCCAATCTACATGGACAAGCAagCTATCGACATTTTGTACACTGGCTCTCAGAAGGTCCTAAACGCACCTCCAGGAACTGCACCAATCTCCTTCAGTGAGAGAGCATGCCACAAAATCTTCAGCAGGAAGACAAAgcctgtgtctttttttctggaCCTGAACTGGCTGGCCAGTTACTGGGGCTGTGATGGAAAACCTGCTCGCATTTATCATCACACTGGACCTGTAACTGCATTATACAGTCTGAGAGAAGGTCTTGCCATCCTTGCAGAGACGGGGCTTGAAAAATCATGGAAACGACACAAAGATGTGGCAGAGTACTTCCATACAGGCCTAGAAAAGATGGGTCTCAAGCTCTTTGTGGAGGAGAAGAAAGCGAGATTGCCcacagttactacagtagtagCACCACCAGGTTATGACTGGAAAGAGATCACACGCTTCATTATGAAGAATCACAACATAGAAATCTCTGGAGGTCTTGGGCCATCAGTTGGCATGGTCCTGCGTGTGGGTCTAATGGGTTGTAACAGCAACAAGGACCATGTGGACATGATTTTAGAGGCTCTTTCTGATGCACTGAAACACTGCCACAAGAGTAAAGTGTAACAACACAGCTTGTGTGGCAAACACAACTTCTGCTGTAACATTAAtgcataaaatgtataaatgtctGAAAAGTACTCCTACTTTGAAATCACAACtaaagaaacaggaagtgctcTTATGCTGACATTTGGAACATTATTAACACAGTATGGATTCACAATTTGGAGTTGTAGCAGTAAGCTCTGTTTTATGAATCTCTAATATTATAGTTATAAATCTCTTATAATATAGTTTGTCTAATAATAGTTTTACttacaatatatttatagatttttttttaaattgttattatcAATGTAAGAATCTGTACTGAATATctgttacaaataaatatttgctatatataacaaat

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0008483 transaminase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34949 lncRNA downstream 68488 18890717 ~ 18895805 (-) True G29614
TU34947 lncRNA downstream 77282 18883984 ~ 18887011 (-) True G29612
TU34889 lncRNA downstream 157543 18794032 ~ 18806750 (-) False LOC113537624
XR_004579392.1 lncRNA downstream 157943 18794025 ~ 18806350 (-) False LOC113537624
TU35046 lncRNA upstream 14615 18984062 ~ 19049735 (-) True G29678
TU35173 lncRNA upstream 289503 19258950 ~ 19259178 (-) True G29793
XR_004577309.1 lncRNA upstream 413867 19383314 ~ 19385251 (-) True LOC117596148
TU35304 lncRNA upstream 434961 19404408 ~ 19404621 (-) True G29905
TU35482 lncRNA upstream 568474 19537921 ~ 19540054 (-) True G30062
XM_026916714.2 mRNA downstream 2622 18957773 ~ 18961671 (-) True dtymk
XM_026927091.2 mRNA downstream 37092 18916625 ~ 18927201 (-) True stk25a
XM_034312132.1 mRNA downstream 128504 18820057 ~ 18835789 (-) True hdlbpa
XM_026912723.2 mRNA downstream 273211 18688598 ~ 18691082 (-) True sox14
XM_026927315.2 mRNA downstream 340685 18615977 ~ 18623608 (-) True LOC113534471
XM_026916667.2 mRNA upstream 861 18970308 ~ 18976937 (-) True zgc:103559
XM_034310948.1 mRNA upstream 861 18970308 ~ 18976929 (-) False zgc:103559
XM_026916676.2 mRNA upstream 861 18970308 ~ 18976621 (-) False zgc:103559
XM_026924570.2 mRNA upstream 402983 19372430 ~ 19376164 (-) True im:7152348
XM_026923318.2 mRNA upstream 574705 19544152 ~ 19552693 (-) False bcl6aa
trnap-ugg other downstream 147095 18817127 ~ 18817198 (-) True trnap-ugg
trnag-ucc other downstream 147963 18816259 ~ 18816330 (-) True trnag-ucc
TU34886 other downstream 157543 18794032 ~ 18806750 (-) False LOC113537624
trnae-cuc_6 other downstream 386998 18577224 ~ 18577295 (-) True trnae-cuc_6
TU34546 other downstream 891384 18070987 ~ 18072909 (-) True G29279
trnap-ugg_1 other upstream 410994 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-cgg_1 other upstream 416995 19386442 ~ 19386513 (-) True trnap-cgg_1
XR_004580158.1 other upstream 2494414 21463861 ~ 21531428 (-) False raver2
XR_004580163.1 other upstream 2494414 21463861 ~ 21531428 (-) False raver2
XR_004580160.1 other upstream 2494414 21463861 ~ 21531428 (-) False raver2

Expression Profile