RNA id: XM_034314146.1


Basic Information

Item Value
RNA id XM_034314146.1
length 8480
RNA type mRNA
GC content 0.51
exon number 37
gene id ptprfa
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16625654 ~ 16832868 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATCCTCGTGATAAGTTTAATCATGGATCCTGGAATAGCAAGCACTGGAAGATCCGGAGCAGAGGAGCGGGATCTGGAGGGAAACACTGCTTAAGGAAACACGTCCGGTgtccggagagagagagagagagagagagagagagagagagagagagagagaggagagcgCGAGAGCAGAAACAGAGCAGAGCTGCCGCCTGCCACACGGAGAAGCGCGCGCGCACACGGACGGCAGAAGAGCTGTTTGTTTCATCCAACGGACCTTATACTCGTGTTTGAGGAATATACTTTGAATTTGCGTGGGGAATTTTCTGTCTGCTTTAAGACTCTGTGGAGAGAAAACGGGACacgacagaagagagagagaggagagagagagagagagaggggacgCGGCTGCTGTTCAGAGCGAGCGCGCGCGCACGAGATACAGAGAACCTAGAGCATCAATGCATGGAGAGAGCGTGAGTTTAAAATGCGCACCGCTCACGTTATCCTGCTCtgattttaggggaaaaaaaagagaacactTCAGGTGTGTGTCGATGCTGCGGTGAGCTGCTAGGAGTCGaggtgtgtggagtgtgagctCAGGTCATGGTGCCACATCACACACGGTCGTCTCGTTTCCACAGCGCGGCcggcctgctgctgctgctcggACTCGCTGCACATATACGGGGAGACAgcaTGCCCAGCTTCATTAAGTCTCCAGAGGATCAGACTGGCATTTCTGGAGGCGTTGCATCTTTCGTGTGCCAGGCAGTTGGCGAGCCCAAGCCACGTATCACATGGATGAAGAAGGGCAAGAAAGTCAGCTCACagcgctttgaggtgaTTGAATTTGATGATGGCTCAGGGTCAGTGTTAAGGATCCAGCCCCTGAGGACGCACCGAGATGAGGCAATCTACGAGTGCACAGCCACTAACAGCATGGGGGAAATTAACACCAGTGCCAAGCTCACTGTCTTGGAAGAGGACCAGATCCCTCACGGTTTCCCCACCATAGACATGGGTCCTCAACTGAAGGTGGTGGAGAGGACCCGCACAGCCACCATTCTGTGTGCAGCAAGCGGGAACCCAGACCCTGAAATCTTCTGGTTTAAAGACTTTCTCCCTGTCGACATCAACGGCAGCAATGGGCGAATCAAACAGCTGCGCTCAGGTGGTACACCAATCAGAGGTGCGTTGCAGATAGAGAACAGCGAGGAATCAGATCAGGGAAAATATGAGTGTGTGGCGACGAACAGCGCCGGGACACGATACTCCGCTCCGGCTAATCTCTATGTCAGAGACCAGCGGGAAGTCAGGCGAGTTCCACCGCGCTTCTCCATTCCCCCTACCAATCATGAGGTGATGCCCGGTGGCAGCATCAACCTTACGTGCGTCGCTGTCGGCGCCCCAATGCCTTTTGTCAAGTGGATGAAGGGTGACACGGAGCTGACCAAAGAAGAAGAGATGCCCATTGGACGCAACGTGCTGGAGCTCAACAACATCCGCCAGTCAGCCAACTACACCTGTGTGGCTATGTCCTCATTGGGCATGATCGAGACCACTGCGCAAATCATCGTCAAAGCCCTCCCTCGCCCCCCCATCTCTCTAATGGTGACTGAAACCACAGCGACCAGCGTGACTCTGACATGGGATTCTGGGAACCCAGAGCCTGTCTCATACTATGTCATCCAGTACCGTGCCAAACACTCTGACAACGGCGGATTCCAGGAAGTGGACGGTGTGGCATCAACACGCTACAGCATCGGTGGATTGAGTCCATTCTCACCATACGAGTTCCGTGTCATGGCCGTGAACAACGTGGGGCGTGGCCTGCCAAGCACGTCTGTGGAAACACGGACTGGCGAGCAGGCACCATCGTCTCCTCCGCTGAGGGTGCGGGCCAGGATGCTGAGCTCAAGCACGGCGCTGGTGCAGTGGGAGCCGCCCGAGGAGCCAAACGGCCTCATCAGGGGCTACAGAGTATATTACACACATGATGCGCACTCATACGCGCCACTCAGTGCCTGGTACAAGCACAACACAGCTGACGCAGCACAGCTGGCCACCATCTCGAACCTGGTGCCTGGTACCACCTACAGCCTGCGTGTGCTGGCATTCACAGCTGTGGGAGATGGACCACCATCCCCCACACTGCAGATTAAAACACTGCAGGGAGTTCCAGCCCAGCCAAGTGAATTCGAGGCAGAGGCGGAGCTCGACACTCGGATCATGCTGCGTTGGCTTTGGCCTGTTCAGGACCAGATCATTAAATATGAGCTCACCTACTGGGAAGCCGACTCTGGACACAagAACCATGTGACCTTTGACCCGGCTGGTTCATATGCTGTGGAAGGCCTGAAGCCCGACACTCTGTATAAATTCACGCTGGCTGCGCGCTCTGGAATGGGTTTAGGCTTGTACACACAGCCCATTGAGGCTCGCACGGCCCAGTCCACCCCATCCGCCCCTCCTCAGGACGTGCAGCTTCTCAGCCTCTCTTCTACCAGCATCAAGGTGAGTTGGATGGCGCCTCCTGTTGCCAGTCGCCATGGGAACATTGTCCGCTATTCCCTGGCCTACCAGGCGCCCTCGGGGGAGGACCAAGAGCGCCATGAGGTGACGGACATCCCTGCCGATGCCACCAGCTATGTGCTTGAGGACCTGGAGAAATGGACATTGTACCAGGTGTGGGTTAAAGCCCATACTGATGTCGGGCCAGGCCCTGAGAGCAGCAGCACCTGCATCCGGACTCAAGAGGATGTGCCTGGAGCTCCTCCGCGCAGGGTGGAAGTGGACGCAGTGAACTCTACAGCACTCCATGTGGCCTGGAAGCCTCCACTGGTGCAGAAGCAGCATGGAGAGATTCGCGGTTATCAGGTGGTTTACTCCCGTGTGGAGGACGGAGAACCTCGAGGACAGCCCACTATTCTGGACATAGCCCTGCCCGATGCTCAGGAGGCCTACATCACAGGGTTGCAGGCAGAGACATCATACTCAGTTACCGTGGCAGCGTACACAACTAAAGGTGATGGGGCTCGGAGTAAAGCCAAGGTGGTCACCACTACAGGGGCAGtgcCAGGTAAGCCCACTATGATCATCAGCACTACAGTGGGTAACACAGCTCTGATCCAGTGGCAGCCTCCAAAAGAGACGTTCGGCGAGCTGTTGGGCTTCAGACTGCAGTATAAACGCCAGGACGACAATGATAATGATGACAAAGATGACAATGATGAAGGCTCGTTCATCACGCGCCACTTCATGCGCACCGATGACCACTTCACCGTCACCGGGCTGCTCAAGGGCTCCACTTATAGCTTCAGACTGAGTGCCAAGAACCGAGCCGGCCACGGAGAGGAGCACGTTAAAGAGGTCACAACCCCTGAGGACACACCTAGTGGTTACCCACAAAACCTGAGTGTGGTGGGATTGAGCTCCACCTCAACAACTCTGGCATGGGCACCACCACCCCTGGGGCAGAGAAATGGCAAAATTGTGCGCTATGATATTGTGTACCGTGACATCAACAGTGTAAAGAATCAAACCAACAGTACAACAGAGACACGCATGAGCATCAGCGGCCTGAAGCCTGACACTACCTACGACATCAGAGTGAGAGCCTTCACCAGGAAGGGACCAGGACCTTTCAGCCCCAGCATTCAGAGCAGGACCATGGCCACATCTGTGCCTGAATTTGCCAAAAACTTTGGGGTGAAAGCAGCAACAAAGACCTCAGTACTGCTCACGTGGGAGGTGCCTGAAACCTACAAGCCTCAAGTGCCTTTTAAgATCCTGTATAACCAGCAGAGCGTGGAGGTGCAGGGCGATCTACGGAGGAAACTGATCACCCGTCTTCAGCCCGACACCGAGTACTCGTTTGTGCTGATGAACAGAGGCAGCAGCGCCGGAGGACTGCAGCAGCAAGTGTCCATCCGCACAGCCCCGGACTTGCTTGACAAAAAGCCCAGCCGCTCGGCCCATGAGTCTGCTGTGGGTGGAAGAGTCACTCTAACCTTGCCCACAGTGACCGCCAGTGCCTCTGCACATATCAGgTGGTACTACATAGTGGTGGTGCCCATGAGTCAAGCTACATTGCGCCACTGGGAAAGTCCAGAGGACATCGACCTGGATGAGttgttAGAGGGTGGTGGAGATTCAACtgtgatgaagaggaagaggaggcagAGTGACGACTCCCTGAAGCCATACATCGCTGCAAGGCTGCACACGCTGCCGGAGAGCTTCACACTCGGAGACGAGCGACACTACAGTGGCTTCTACAACAGAGCACTGCTCTCTCAGACTCAGTACCGAACCTTCATCATGGCTGCTCTCCAGGAGCACGACTCTaaaaTATTTGCTACAAGCCCATTCTCAGACCCCATCATGGTGCAGGTGCACATGTCCCGACACGCAGAAGATCCGGAGATGCTCTGGGTGATGGGGCCGGTGCTGGCTGTCGTGCTCATCATCATTATCGTCATCGCCATCCTTCTATTCAAGAGCAAACAGGAGAggaagCGAGCATCTCCCTCAGTGAAGGATGAACACACAGCCGGAGTGAAGGACCATCTGCTGGCCCACTCGTCTGATCCCGTAGAGATGAGGAGACTAAACTACCAAACACAGGGTTCCAGTGACCCAAGTTGTCCAGACACTCCAAGGATGAGAGAGCACCCGCCCATCCCCGTCTGTGACCTGGCCGAACACATTGAGCGGCTCAAAGCCAATGACAACCTCCGATTCTCTCAGGAATATGAGTCAATTGATCCCGGGCAGCAATTCACCTGGGAACACTCCAACCTCGAAGTGAACAAGCCAAAAAACCGCTACGCTAACGTCATTGCCTACGATCACTCCAGAGTTGTCCTGTCACCCATCGATGcTATACCAGGAAGCGACTACATTAACGCAAACTACATAGATGGATACAGGAAGCAGAATGCCTACATCGCTACACAGGGCCCCCTGCCTGAGACTGTCAGTGATTTCTGGAGGATGCTGTGGGAGCAGAGGAGCAGCACCATCATCATGATGACCCGACTGGAGGAGAAGTCTAGAGTGAAGTGTGATCAGTACTGGCCGAGTCGGGGAACAGAGACGTACGGCATGATTCAGGTCACACTGCTGGACACGGTGGAGCTTGCTACATACAGTGTCAGAACCTTTACTATGTACAAGAGTGGCTCCAGTGAAAAGAGGGAGGTGAGGCAGTTCCAGTTCATGGTGTGGCCGGATCATGGGGTGCCTGAGTATCCTACACCCATCCTGGCCTTCATGCGCCGAGTCAAAGCTTGTAACCCACCAGACGCTGGACCCATGGTGGTGCACtgcagTGCGGGCGTGGGCCGGACAGGCTGCTTCATCGTGATCGATGCCATGCTGGAGCGCATGAAGCACGAGCAAGTAGTGGACGTGTACGGTCATGTGACCCTGATGCGCTCTCAGAGGAACTACATGGTGCAAACGGAGGATCAGTATGTCTTCATCCATGACGCGCTGCTGGAGGCAGCCGTCTGTGCACACACCGAGGTCCCTGCACGCAGCCTTTACTCACACCTCCAGAAACTAACAAACACACCTCCGGGGGAGACCGTCACTGCCATGGAGCTGGAGTTCAAGAAACTGGCCAACTCCAAAGCACACACCTCCCGGTTCATCAGTGCCAACCTGCCATGCAACAAGTTCAAAAACCGGCTCGTCAACATCATGCCATACGAGTCGAGCCGAGTGTGTTTGCAGCCCATCAGAGGAGTGGAGGGATCCGACTACATCAATGCCAGCTTCATCGACGGATATAGgcagcAGAAGGCATACATAGCGACACAGGGTCCTCTGGCTGAGACCACAGAGGACTTCTGGAGAATGCTTTGGGAGCACAATTCCACCATTGTAGTCATGCTGACCAAACTTAGAGAGATGGGAAGGGAGAAGTGCCATCAGTACTGGCCAGCTGAGCGCTCAGCACGTTATCAGTACTTTGTGGTGGACCCGATGGCTGAATACAACATGCCACAGTACATCCTGAGAGAGTTCAAAGTCACTGATGCCAGgGATGGCCAATCCAGGACCATCCGGCAGTTCCAGTTCACTGATTGGCCAGAGCAGGGTGTGCCAAAGACGGGGGAGGGATTTATCGACTTTATTGGCCAGGTGCACAAAACCAAGGAGCAGTTTGGCCAGGACGGACCAATTACTGTtcactgcagTGCCGGCGTGGGTCGTACAGGAGTGTTCATCACTCTGAGTATCGTACTGGAGAGGATGAGATATGAGGGAGTGGTGGATCTGTTCCAAACCATCAAAACACTGCGCACTCAGAGGCCAGCCATGGTACAGACTGAGGACCAGTATCAGCTGTGCTACCGAGCAGCTCTTGAGTACCTGGGCAGCTTTGATCACTATGCAACATAACCACTCGTCTGAAAACCTCCGGAAAGCCCTGAAACGCCCCTCAGGAGAGCAGGCGGATCATTCTGAGCTACAACCCACACTCCACCGATTCAGTTTAGGggtttaaagagagagagggagagagagggggagtgAGAGAGACGAGAAAGTACAGGAAAATGTGAATGGCAAGCAGGGCGCTTACAACTCCTTCTAGTCCTGCATCCATTCCTCTTTCCGAACACAAAAGTGCCGCTCTGGTgtcaatattacaaaaaaaaaccatgttATAGCATAATCTCTGAATCCTGCTGAGACTGAAAATCTTactaatttttcttttaatcattgTTGTCATATTAATCATcattaccattattattattaattattattatgaccaTACAATATACAACACAACTATGTAATTGTTGTCATTTATACTGGTATCTGTAATGGgtctatttttattcttttttatcctttttattttttatatacatattttaaaataatcatttattatttcatgttATTGTTATCACCATATGGTCTTATATGTTTAGTACATGGGCGTGTATTTTAACACGACCTGAATACACTGAGCTGCTGATCACGTCTTTGTTAATATCgttatgttattttaatgaGACTGCGATTATTCAGCGGGGGAGGGGAAGAACTTCTGTACACCTTTTCTTCTGGCACCTTTTTAGAACAAATTATGTGACTTCAATATGATATTAAATGATGTGAATCCAGAGTCAGTGAGCAGTGATCATGAGATCTGGGAATGATACAGTGTATAAACTGCGAGTTTGCAGGAAATTAGGCCAAAACTGATCAGACATGTACCAGACATGTACCATTCTATTCCTTAAAGGTTGGGTCAGCGATTTTTAAAGTCAAAAcatgttttgtaatatttaatgaaGCCCTTCTCACATCCAAGCAGCTAcctgtaaaatattttggaGGGAATACTTAGCGGATGGGctgtatgttttggattttaAGTTTCACAACAGGTAGCGTTAGCTAGGTGTTGAGGATCCATTTGCACAAAGTTGTGGCCAACAGAGCAGAAATGAAATCCAAACTCAACATATAGGCAGGAAAAAGGTCAAAGCACATTTGGTCATAAACTTAAATATCCAAGACAAGGGCTCAAACATGATATAGCAAGCAGAGCAAACAAAGCTCTGAACAGAACAGTTGGCTCTGAACAGTTGTACAGAaaggcaagacttcgcaacgAGTAAATGTCCAtgaactttttatatatatgctaAAACCAGGAAGTAATCCAGAAGTGACTGTTAGAGGTCGCACTAGTATGCCAGTGAGCACAAAACCTCTACTGGGAAGTGAATGTCCTTGTTACGCTAACTTCTCCAAAAAAATCGCTGACTATACctttaaaaaactgttaaaatatcCACGATAACAATGAGGCTTCTGACCAGAGCATCATAATTGTGATGATGTTACTAGCCATGTGCAGGTCTAACATGAAGTCTTCACtccatacaaagccccacacacacacaccaacagagTGTAgtgatacaaaacaaaaaagtacagcACAATTAATACAACACATAATAAACAAGGTATTTACAGCAAGACATAACACTAAATTTGGGATGTCTAAGAGTGTCCAAAATTTTAGCAGGGTAACACAATGTTTAATACTGTGCTGTTATCAGGATTATTTCGTGGTTGATTATAAGCCACAGCGTAGAAGAGTCTGCTGAATCTACTGATCCTGAAGTCCCTACACATGGTATTTTCACATACCGTCATCATCGTCTGATCATATGTCACTGTGGCTCGGAAGGACAATATCACAACATAACCAAGAAGAATCACCGGCTAGAGAAACTCGAGCGCTTAACTTCTCTGAAGGCTAAAAGTGAGGTGGATTTAAACACACTGGACCACTCAGCGTTTCCTTTGAGATGTGAGAGGCTTCGTTCGCTCTGTTGGACATGCAgtttgttttctatttgttaataaaacagaagagagagagagaggaaatatgTTCCAAATACCTTGATGTTAATAAAGTTGAATAATTGGGTTTTGTA

Function

GO: NA

KEGG:

id description
K05695 PTPRF, LAR; receptor-type tyrosine-protein phosphatase F

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33936 lncRNA downstream 54130 16570790 ~ 16571524 (-) True G28779
TU33657 lncRNA downstream 135739 16462102 ~ 16489915 (-) False G28537
TU33656 lncRNA downstream 161721 16462102 ~ 16463933 (-) True G28537
TU33626 lncRNA downstream 266133 16358139 ~ 16359521 (-) True G28508
TU33633 lncRNA downstream 296233 16329108 ~ 16329421 (-) True G28515
TU34351 lncRNA upstream 221220 17054088 ~ 17054656 (-) True G29119
TU34418 lncRNA upstream 560590 17393458 ~ 17394467 (-) True G29167
TU34417 lncRNA upstream 561898 17394766 ~ 17396199 (-) True G29166
TU34423 lncRNA upstream 591003 17423871 ~ 17429778 (-) True LOC113528975
XR_003403011.2 lncRNA upstream 592736 17425604 ~ 17429486 (-) False LOC113528975
XM_034312398.1 mRNA downstream 3057 16589347 ~ 16622597 (-) True kdm4aa
XM_034312444.1 mRNA downstream 39410 16534768 ~ 16586244 (-) False st3gal3a
XM_034313328.1 mRNA upstream 233487 17066355 ~ 17169352 (-) False szt2
XM_034313340.1 mRNA upstream 233487 17066355 ~ 17169352 (-) False szt2
XM_034313333.1 mRNA upstream 233487 17066355 ~ 17169352 (-) False szt2
XM_034313342.1 mRNA upstream 233487 17066355 ~ 17169352 (-) False szt2
XM_034313338.1 mRNA upstream 233487 17066355 ~ 17169352 (-) False szt2
TU32920 other downstream 1156425 15461950 ~ 15469229 (-) False oxtr
TU32916 other downstream 1164653 15456635 ~ 15461001 (-) True G27925
TU32819 other downstream 1326635 15297309 ~ 15299019 (-) True G27843
XR_003403256.2 other downstream 1749664 14872948 ~ 14875990 (-) False pxmp4
TU34409 other upstream 440087 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 680844 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34529 other upstream 1116289 17949157 ~ 17949718 (-) True G29263
TU34546 other upstream 1238119 18070987 ~ 18072909 (-) True G29279
trnae-cuc_6 other upstream 1744356 18577224 ~ 18577295 (-) True trnae-cuc_6