RNA id: XR_003403825.2


Basic Information

Item Value
RNA id XR_003403825.2
length 1861
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC113538262
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 22990447 ~ 22995189 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

caaagtcGGACGCTTCTATACTGTATCAAATTGACAGCTGATTAGGTCATCCATCTCCTCTCATGCTAGAATCCATCTCCATAAAGCAATACCTTTTGTCAACAGCACAGTGCAAGCACTGACCACTGCATCATATTTTACCAGCCCTATTCATTGTCCTATTCATTGTGTTTTGTtgactccctccctctctctcactctcgctctcgctctctctctctcgctgctCCCTGCAGGGATCTATGATGGTGACCTGCATAACAAACAGAAGTGTCAGTGGGCAGGCCTCATTGCATACTGGACTGAGGTTGTGACAGGCCCTTACCAGGCAGAATTTCATGCACCAGTGGACACCATTTTCCATCCTACAGTAGAAATTGATACACAGATGCCTATGGTTCCCTCTTATCTTCAGGCACTTCTCCTATGATCCTGAGAGTCTCCATAATGATAATGTCTCCCTTCTAAAATGCAGCTGCCGGGTTGCCTGGAAACCCCTAATCAGTAGACTCCTGGCCAAGAAGACACTGCTGCCATATAAACCCAGAAAGAGTCACTTCTAGTCAActctgcaagaactccagctcTTGAATTTGTCCCATGACAAATGCCAGCTCTTCTAATCTGCATTAAATTGCAGTAAAGGCACTCACTATTTCTCTTCCATGGGACTGATCTGCCAATTCATCCACCCGCTTCACTTGCTGATGCTGCAAGGCAAAGgagctatttttttctttccagcaGGCTCTGCTGGTGTATCAGCTTCTTGCTGTGATCACACAGCGcagcaaaatattaattaagctATCCTTATGTACAGTAATCCACGATTCTCTTTCGGAAAAATGATTGATTTCAGTTTCTCAGTTGAATATGCATATCATGTAgtgtttacatataaaatgcGACTATCTTCAAGATTGTTAGACTCTTCTGAGAAGAACAAGCCTATTTACATGGTGTTTGGATCACTATTGGCTGTGTCTAACCAAACACATCCAACCATATCTGAGTTACTCTGGACAATCTAAAATATCCCTTCACTGTCACTCTCACACtcctgttttatttactttctcatGCTCtgtctcctgattggctgcagcTCCTGCCAGTTACCATATAGCAGGACTTCTTTCATGCCTGAACTTGGGGCATGATAACTTTGGACATATCTGAACTGCCATATAACATCCCTGCCATGACCTGACATCCCTGACACAGCAGTGACTGTGAATTACTACCACAGGAATGTCAGGTGACTCACAGCAACTCGGGAACAATGTATTTTACTTCATAACATCAACTCAATAATCAACcattttgctctttctttctttcaagaaAAATCCTGTAGGCATTTCCCATTCTCCTGAAGGGTCCCTATAGTGCTAGAGTTGacattattttcaaaaaataaaaacaattaattaatatcgTCCAGCCAACAGTAATTCAACCACTTCCAGTCTTATTAAGAAAGGAGGAGAAACaatttctctcttgctctctcgcCATTTATAAGTGACTTCCATCTGTTTTCACTTTAGCAATAAAACTTGTTTTatgtgcttgtgtatgtgtgtgtgtatgcgtgtgcgtGAGAGAGTGAAGCCTCCTGTGCCAGTTCAAATCTATCCAAGCCATTCTTGTTTATTTTCCATGAGTTTGAGCACTGCTGTTAATGTGGCCAAACAGATTCCATAGAATTTTCTGAGATGGGAAATGTTAGGATGCTAATCTGAACCATAGGAAATTCACTAAATCATGTCATGCTAAATTATGTCTCTGAaatggtaaaaaataaataaataaatgaatgactcCTTCATTTTCTCAGTTTCCCACTTATCATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37952 lncRNA downstream 204757 22711213 ~ 22785690 (-) True G32157
TU37680 lncRNA downstream 405257 22582348 ~ 22585190 (-) False gpbp1l1
TU37658 lncRNA downstream 412612 22577631 ~ 22577835 (-) False ccdc17
TU37647 lncRNA downstream 421611 22565292 ~ 22568836 (-) True G31934
TU37648 lncRNA downstream 421611 22565292 ~ 22568836 (-) False G31934
TU38041 lncRNA upstream 47342 23042531 ~ 23042762 (-) True G32244
TU38121 lncRNA upstream 229893 23225082 ~ 23225389 (-) False dmrt2b
TU38487 lncRNA upstream 683593 23678782 ~ 23683686 (-) True G32629
TU38557 lncRNA upstream 1024936 24020125 ~ 24020779 (-) True G32686
TU38651 lncRNA upstream 1223304 24218493 ~ 24218937 (-) True G32777
XM_034312142.1 mRNA downstream 25592 22773126 ~ 22964855 (-) False pik3r3b
XM_034312138.1 mRNA downstream 25592 22773126 ~ 22964855 (-) False pik3r3b
XM_026933188.2 mRNA downstream 25592 22773126 ~ 22964855 (-) True pik3r3b
XM_026933189.2 mRNA downstream 197124 22773126 ~ 22793323 (-) False pik3r3b
XM_026933190.2 mRNA downstream 197473 22773126 ~ 22792974 (-) False pik3r3b
XM_026933622.2 mRNA upstream 53397 23048586 ~ 23062081 (-) False pomgnt1
XM_026933621.2 mRNA upstream 53397 23048586 ~ 23062081 (-) True pomgnt1
XM_034312071.1 mRNA upstream 68338 23063527 ~ 23071529 (-) True prpf38a
XM_026933572.2 mRNA upstream 91418 23086607 ~ 23095386 (-) True mpl
XM_034312063.1 mRNA upstream 91418 23086607 ~ 23093888 (-) False mpl
XR_004580163.1 other downstream 1459019 21463861 ~ 21531428 (-) False raver2
XR_003403848.2 other upstream 620968 23616157 ~ 23632013 (-) False uap1
XR_004577321.1 other upstream 2905541 25900730 ~ 25907994 (-) False LOC113538393
XR_003403851.2 other upstream 3085960 26081149 ~ 26105456 (-) False slc19a1
TU39875 other upstream 3635640 26630829 ~ 26638504 (-) True ecrg4b
TU39865 other upstream 3644644 26639833 ~ 26649379 (-) False si:ch73-23l24.1

Expression Profile