RNA id: XR_004577195.1


Basic Information

Item Value
RNA id XR_004577195.1
length 2020
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id LOC117596032
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 22130425 ~ 22132698 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCAAAGGCATTAGCAAAATGAGTCAAAGGCACAGGTATTAGTTACACTCACGAGCATTTTGTtgtataacaaatataacaaaacGGTCAGTTCGGATAGGCAGGCTTTCGTGTTTGAAGAGACcgtgttttatgtttttgaaTTGAGCCTCAACATTTGCAGAGCTTGCTGTGTTGTGTACACTTTTGAAGTGTGGAACCATCACTGCTGTCCAAAGAGGGAGATTTATGACCCACATTTTCAGATCTGTGTGGAGTGTCTCATCAATTCCAGTCACCTCTACTGAATGGTCGTCTTCAGTGATGCATGGCAAGGCCCTCTATGCAATTCGTCTCTTCAgctgtgttttgcatgtttcaGAGACAACAGGCATTCCCACCAGCTAATGAGCTTGACGCAGTGTGCAACATCAACTCTGATGAAGCAGGGTGGTAGCTGTAAGTCTTTGTACTTCTTCGTCAGTACTCCAAAGCACTGATTGACATATGTTTTTAGGTCTGAGTAAGGAGTGAAGGCCTTAACCAATCCTCCAAGCAAAGCTAAGGAGAAATCACAGACTGCCTCTTTGGGCACAGTAGCACCTGTTCGTTGCCATTCAGTGAGCCAGTTTGCAGTGGAATGGATAGTGTGGTTCTCTGTCAGCATCTGCACAACTGGAATGTGATCTCCCTGTGAGCACAAAACTCCTTGGTACAGGAAGATATGCCCAAAATTGCCACAAgtttttttcagtcatttcaCAACTGTACCCGTTGCATCAAAACTCACAAAGGAACCAGAGTGCTTGGATCTCATTTGATAAACTTGCATCTGAGATGGAGTCcagtaatgacaaaaaaaacctatCAAGGCCTGTGTCGTGGATGCTTCCATTGTGGGGAACACTGTATTTAAGTAGGTGCAATGACATGATTAGGTCTTTGTCTCCAAGCTCTTTGTCACCCATTTGTTGTTTGGCTTTTCTTAAAGTTGCCAGATTTGGTAAGTGGCCAGGCTCTGGGTCACCAACATCCATCATTTTGTAAGCCTCAGCTGCTCCCCAAACATGTACTGGTTTTCATCCTTCCCAGAATTCTTTAGACACACATGTTCTCAGGTCCCCTGATAATTTGCGTTGTGCTTTGCCAGTGTGGAGACTGTCATTGACATTGCAGATCATGCATTTAAGGACAACAGGTTCGTTAGCTGCTGGCATATTTTCGGCAGTTATAGGCAGCTGTGCATCACACTCTGTGCATTGCCCAATTATGTTTATATAGTGAGATGTAACATTTGGGTACATTTTTGCTCCCCTGAATCAAAGAGTGCATGAGGTCTTGATATTTTTCCATATCTCTTCATGCAGAGTGTGAGTCCATGCACCAGGTTTTAGAATAGTGTATTCCCTTTGACATGTGCCAAGTGATTTGTCATTGTAAACAACTTTTTCAGGCCAAATTTCAACCCATTTCTGATGAGAGAGACTGATCTCAAACTGAATGTCATAGCATTGACATTGCTGATTTGTGTCTGACACTGGGGAGTCCAAAACTGATGTTTCTGGTGAGCTGTCACTGTTTGGATGTTTATCTTGGACATTGGTGTTGTTTTTGCATAGCTCAAGGATTTGCCATATattgtgtctgtttgtcttGACAGTAGTATAAAGATTCTTTGGTGAAACTTTGTTGTTTAGTTGTTGGCTTAAGTCCACCCACACCTTTTCTGAGGGACCTGCTACATTCAATCCCGAAACAATCCGTTCCTTTGCAGCTCTGATGacattgatgatgtcatcactttCACAGGCTGGTCTCTTTGGAATCTGATCAAAACAGGAATTATTTTGATGTAATCTGTGGGCCAGTGGCGCTAATGTACTACTAACAGTGCACAAAACAGATCCTAATGTTATGTACATGTTTATCTGTACTGTGGTTATTTTCAAAAGGTATTTTACAGTCAGTCAACTGTTAGGATATATAGTACCTTGCAAAAGTTTAGGTACTTCATAGTATTTTTACCCCCCAAAATATTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37369 lncRNA downstream 26014 22104198 ~ 22104411 (-) True G31681
TU37144 lncRNA downstream 514750 21615321 ~ 21615675 (-) True G31492
TU37138 lncRNA downstream 517603 21569856 ~ 21612822 (-) True G31486
TU37143 lncRNA downstream 521258 21607396 ~ 21609167 (-) True G31491
TU37141 lncRNA downstream 526562 21602544 ~ 21603863 (-) True G31489
XR_004579711.1 lncRNA upstream 40653 22173351 ~ 22175740 (-) True LOC117599244
XR_004579710.1 lncRNA upstream 63896 22196594 ~ 22197668 (-) True LOC117599242
TU37433 lncRNA upstream 91687 22224385 ~ 22226660 (-) True G31742
TU37446 lncRNA upstream 183108 22315806 ~ 22316006 (-) True G31755
TU37625 lncRNA upstream 405625 22538323 ~ 22560608 (-) True G31916
XM_026916634.2 mRNA downstream 83967 22035213 ~ 22046458 (-) True usp1
XM_026916626.2 mRNA downstream 84229 22035213 ~ 22046196 (-) False usp1
XM_026916618.2 mRNA downstream 84230 22035213 ~ 22046195 (-) False usp1
XM_026916652.2 mRNA downstream 133704 21993695 ~ 21996721 (-) True angptl3
XM_026927983.2 mRNA downstream 162216 21957535 ~ 21968209 (-) True atg4c
XM_034314533.1 mRNA upstream 11505 22144203 ~ 22150238 (-) True LOC113538524
XM_034314538.1 mRNA upstream 25010 22157708 ~ 22199634 (-) True LOC117599932
XM_034300900.1 mRNA upstream 186437 22319135 ~ 22322050 (-) True mafaa
XM_034311953.1 mRNA upstream 194757 22327455 ~ 22390555 (-) True zc3h3
XM_034311946.1 mRNA upstream 257555 22390253 ~ 22392793 (-) True LOC117599264
XR_004580163.1 other downstream 598997 21463861 ~ 21531428 (-) False raver2
XR_003403848.2 other upstream 1483459 23616157 ~ 23632013 (-) False uap1
XR_004577321.1 other upstream 3768032 25900730 ~ 25907994 (-) False LOC113538393
XR_003403851.2 other upstream 3948451 26081149 ~ 26105456 (-) False slc19a1
TU39875 other upstream 4498131 26630829 ~ 26638504 (-) True ecrg4b
TU39865 other upstream 4507135 26639833 ~ 26649379 (-) False si:ch73-23l24.1

Expression Profile