Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579569.1 |
| length | 1105 |
| lncRNA type | inter_gene |
| GC content | 0.40 |
| exon number | 2 |
| gene id | LOC117599142 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 20197220 ~ 20199516 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU35799 | lncRNA | downstream | 84702 | 20104252 ~ 20112518 (-) | True | G30320 |
| TU35741 | lncRNA | downstream | 183215 | 20012425 ~ 20014005 (-) | False | glmnb |
| TU35735 | lncRNA | downstream | 211301 | 19984675 ~ 19985919 (-) | True | G30270 |
| TU35712 | lncRNA | downstream | 273241 | 19923763 ~ 19923979 (-) | True | G30255 |
| TU35701 | lncRNA | downstream | 283269 | 19913653 ~ 19913951 (-) | True | G30246 |
| TU35898 | lncRNA | upstream | 17 | 20199533 ~ 20207732 (-) | True | G30412 |
| TU35910 | lncRNA | upstream | 47089 | 20246605 ~ 20246871 (-) | True | G30421 |
| TU35911 | lncRNA | upstream | 47595 | 20247111 ~ 20247337 (-) | True | G30422 |
| TU35912 | lncRNA | upstream | 48650 | 20248166 ~ 20248509 (-) | True | G30423 |
| TU35920 | lncRNA | upstream | 115322 | 20314838 ~ 20315511 (-) | True | G30428 |
| XM_026923691.2 | mRNA | downstream | 13926 | 20172128 ~ 20183294 (-) | True | dpt |
| XM_026921732.2 | mRNA | downstream | 41061 | 20146385 ~ 20156159 (-) | True | zbtb11 |
| XM_026921212.2 | mRNA | downstream | 54963 | 20112945 ~ 20142257 (-) | False | dipk1ab |
| XM_026921221.2 | mRNA | downstream | 54963 | 20112945 ~ 20142257 (-) | True | dipk1ab |
| XM_034313310.1 | mRNA | downstream | 96022 | 20039757 ~ 20101198 (-) | False | evi5b |
| XM_034311036.1 | mRNA | upstream | 8239 | 20207755 ~ 20246008 (-) | False | nme7 |
| XM_026923896.2 | mRNA | upstream | 8239 | 20207755 ~ 20246008 (-) | False | nme7 |
| XM_026923886.2 | mRNA | upstream | 8239 | 20207755 ~ 20246008 (-) | False | nme7 |
| XM_034311031.1 | mRNA | upstream | 22224 | 20221740 ~ 20246008 (-) | True | nme7 |
| XM_026926703.2 | mRNA | upstream | 50599 | 20250115 ~ 20258553 (-) | False | LOC113534100 |
| trnap-cgg_1 | other | downstream | 810707 | 19386442 ~ 19386513 (-) | True | trnap-cgg_1 |
| trnap-ugg_1 | other | downstream | 816708 | 19380441 ~ 19380512 (-) | True | trnap-ugg_1 |
| trnap-ugg | other | downstream | 1380022 | 18817127 ~ 18817198 (-) | True | trnap-ugg |
| trnag-ucc | other | downstream | 1380890 | 18816259 ~ 18816330 (-) | True | trnag-ucc |
| TU34886 | other | downstream | 1390470 | 18794032 ~ 18806750 (-) | False | LOC113537624 |
| XR_004580158.1 | other | upstream | 1264345 | 21463861 ~ 21531428 (-) | False | raver2 |
| XR_004580163.1 | other | upstream | 1264345 | 21463861 ~ 21531428 (-) | False | raver2 |
| XR_004580160.1 | other | upstream | 1264345 | 21463861 ~ 21531428 (-) | False | raver2 |
| XR_004580156.1 | other | upstream | 1264345 | 21463861 ~ 21531428 (-) | False | raver2 |
| XR_004580159.1 | other | upstream | 1264345 | 21463861 ~ 21531428 (-) | False | raver2 |
