Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579666.1 |
| length | 1101 |
| lncRNA type | inter_gene |
| GC content | 0.36 |
| exon number | 4 |
| gene id | LOC117599215 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 24708726 ~ 24723852 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU38731 | lncRNA | downstream | 142742 | 24573182 ~ 24576092 (-) | True | G32852 |
| TU38717 | lncRNA | downstream | 235844 | 24482663 ~ 24482990 (-) | True | G32840 |
| TU38655 | lncRNA | downstream | 458979 | 24259306 ~ 24259855 (-) | True | G32781 |
| TU38651 | lncRNA | downstream | 499897 | 24218493 ~ 24218937 (-) | True | G32777 |
| TU38557 | lncRNA | downstream | 698055 | 24020125 ~ 24020779 (-) | True | G32686 |
| TU38795 | lncRNA | upstream | 43956 | 24767808 ~ 24768010 (-) | True | G32901 |
| XR_004579510.1 | lncRNA | upstream | 70695 | 24794547 ~ 24799425 (-) | True | LOC117599074 |
| TU38817 | lncRNA | upstream | 100383 | 24824235 ~ 24824434 (-) | True | G32923 |
| XR_003403852.2 | lncRNA | upstream | 482870 | 25206722 ~ 25240353 (-) | True | LOC113538494 |
| TU39061 | lncRNA | upstream | 707906 | 25431758 ~ 25431968 (-) | True | G33166 |
| XM_026933450.2 | mRNA | downstream | 337341 | 24330165 ~ 24381493 (-) | True | brinp3a.2 |
| XM_034310289.1 | mRNA | downstream | 588808 | 24077383 ~ 24130026 (-) | False | brinp3a.1 |
| XM_026933099.2 | mRNA | downstream | 588808 | 24077383 ~ 24130026 (-) | True | brinp3a.1 |
| XM_026933100.2 | mRNA | downstream | 589381 | 24077383 ~ 24129453 (-) | False | brinp3a.1 |
| XM_034298073.1 | mRNA | downstream | 805250 | 23902151 ~ 23913584 (-) | False | rgs8 |
| XM_026933302.2 | mRNA | upstream | 244698 | 24968550 ~ 25170260 (-) | True | LOC113538330 |
| XM_034313653.1 | mRNA | upstream | 420966 | 25144818 ~ 25170260 (-) | False | LOC113538330 |
| XM_026933502.2 | mRNA | upstream | 836938 | 25560790 ~ 25564089 (-) | True | pou4f1 |
| XM_034310133.1 | mRNA | upstream | 846169 | 25570021 ~ 25580542 (-) | True | obi1 |
| XM_026933140.2 | mRNA | upstream | 846169 | 25570021 ~ 25579467 (-) | False | obi1 |
| XR_003403848.2 | other | downstream | 1086821 | 23616157 ~ 23632013 (-) | False | uap1 |
| XR_004580160.1 | other | downstream | 3187406 | 21463861 ~ 21531428 (-) | False | raver2 |
| XR_004577321.1 | other | upstream | 1176878 | 25900730 ~ 25907994 (-) | False | LOC113538393 |
| XR_003403851.2 | other | upstream | 1357297 | 26081149 ~ 26105456 (-) | False | slc19a1 |
| TU39875 | other | upstream | 1906977 | 26630829 ~ 26638504 (-) | True | ecrg4b |
| TU39865 | other | upstream | 1915981 | 26639833 ~ 26649379 (-) | False | si:ch73-23l24.1 |
| TU39866 | other | upstream | 1915981 | 26639833 ~ 26649379 (-) | False | si:ch73-23l24.1 |
