RNA id: XR_004579711.1


Basic Information

Item Value
RNA id XR_004579711.1
length 1304
lncRNA type intronic
GC content 0.42
exon number 3
gene id LOC117599244
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 22173351 ~ 22175740 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAATTGTTCTAACCCAACAAATACTGCATTACATGATCTTGACACTGGGCAAGTCGCAGCATGGGGCAACAGGTGTGATAGAAAGTCCAGTTGCCCTTATGCCTCTTGGTCAGGAAATAGAGTGGGGAGATAAGAACGTATTGGTCAGGAAAAAGGGTGAGGAGATGAGAACTGTGGTGGATTATCTTAGGCTGAATAGCCTCACTAAGAAAGCTTTTACAACCCCTTTTGGGAACTTGCAATTCCAAAACCCGCCACAAGGTTATCTAATGCTCCTGTGTCTTTTCAGTGGACTATGGAGAGGATGATGGAAGGAATAAACCTACAGGAGGTGATTGCTTTTTTGGATGGATCCACATTAGAGGACCATGAGGACAGATACATGAAGGTCTTGAAACACATGTCTGAGTTTGGTCTCAAATTGTTCCCttctaaatgtaaatttttccagtcttctgtGAAATACCTTGGCTATGATTTCTGCTGAGGGCATTCTGCCTGATCCTGACAAAAACTCTATGAGAGTTATGAGAGTTATAAACTCTATGGCCACTACATGAGAGATATGGCCACACCTGCAGACATTCAGGGAATTGAATTGTTTCCTAAGCTTTTTGGCTGTCATCACATCTTTATACATGATTACTCTTGTATCGTCAGGCCTCTAAATGATTTATAGAAGTGGGAGTTTTCTAGCACGAAGTTACCACCTTTAGGGGACAGGCGGACTGAACACTTCCAGGAAGTCACTCAGCTCATGACTGAGAAACTCACGTCAACTCCAGTCCTAGGTTTTGCAGACTAGCAACTTCCTTATGTTCTAGCCCCTGATGCCAGCATGACAGTTGTACTGGAGGTGGTCAGGATTGCTAATATGCTAAATCGAGAAACAGGATGGTGTTCACTGGCAGAGCCAGGTGCGAACCCAAAATTTTGTTCGCTACTGGCAGTTTGATGCTGATTGACATCTCATTTCACCTCTTGTTGAAAGAAGCATTCATCAAACATTCAGAACGGCGCATTTTTCAAATCGAGAACGAAGAGAGAATATTAACGTTGATTGCAAGATGCAggagaataagaataagaagaacatgcagaagaagaagagagaataTTTCCACAGCTATAAACTTTCCTGTATGTATCAAGGGATGACACAGAGACCTGTGACTCTAAGCAAGACAGTGAGCAAGAGCTGCCAGGAGATGTCATCGAGCCCCTCCCAACTGCATCGAGcaccaattcaattcaattcaattcatttttatttgtatagcgcttttttacaaaggtcattgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577195.1 lncRNA downstream 40653 22130425 ~ 22132698 (-) True LOC117596032
TU37369 lncRNA downstream 68940 22104198 ~ 22104411 (-) True G31681
TU37144 lncRNA downstream 557676 21615321 ~ 21615675 (-) True G31492
TU37138 lncRNA downstream 560529 21569856 ~ 21612822 (-) True G31486
XR_004579710.1 lncRNA upstream 20854 22196594 ~ 22197668 (-) True LOC117599242
TU37433 lncRNA upstream 48645 22224385 ~ 22226660 (-) True G31742
TU37446 lncRNA upstream 140066 22315806 ~ 22316006 (-) True G31755
TU37625 lncRNA upstream 362583 22538323 ~ 22560608 (-) True G31916
TU37647 lncRNA upstream 389552 22565292 ~ 22568836 (-) True G31934
XM_034314533.1 mRNA downstream 23113 22144203 ~ 22150238 (-) True LOC113538524
XM_026916634.2 mRNA downstream 126893 22035213 ~ 22046458 (-) True usp1
XM_026916626.2 mRNA downstream 127155 22035213 ~ 22046196 (-) False usp1
XM_026916618.2 mRNA downstream 127156 22035213 ~ 22046195 (-) False usp1
XM_026916652.2 mRNA downstream 176630 21993695 ~ 21996721 (-) True angptl3
XM_034300900.1 mRNA upstream 143395 22319135 ~ 22322050 (-) True mafaa
XM_034311953.1 mRNA upstream 151715 22327455 ~ 22390555 (-) True zc3h3
XM_034311946.1 mRNA upstream 214513 22390253 ~ 22392793 (-) True LOC117599264
XM_026933520.2 mRNA upstream 308352 22484092 ~ 22514058 (-) True adcyap1r1b
XM_034300001.1 mRNA upstream 371514 22547254 ~ 22552299 (-) True LOC113538473
XR_004580163.1 other downstream 641923 21463861 ~ 21531428 (-) False raver2
XR_003403848.2 other upstream 1440417 23616157 ~ 23632013 (-) False uap1
XR_004577321.1 other upstream 3724990 25900730 ~ 25907994 (-) False LOC113538393
XR_003403851.2 other upstream 3905409 26081149 ~ 26105456 (-) False slc19a1
TU39875 other upstream 4455089 26630829 ~ 26638504 (-) True ecrg4b
TU39865 other upstream 4464093 26639833 ~ 26649379 (-) False si:ch73-23l24.1

Expression Profile