RNA id: XR_004579952.1


Basic Information

Item Value
RNA id XR_004579952.1
length 446
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id LOC117599540
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 8511307 ~ 8516859 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttttttttttgtatattttaagcTAATTTCCTAGCTAACTCTTGTGATGTCTGGGCTGATGAGGTGAAACCAGAGAGGCTGGataaaacccacacagactcggagagaacatgcacagaaaaaacacacagacgAAACCAGAGCATGGATGATCCAGATTGCAACTTGCAAGATCCTGTGTGTACAAAACATACAATTTGCCCACATCTAAAGCTGAGACAACATTTCCACTGGAACTTTTTGAAGAACTATCCTAAATTAGAGCTACACAGTTAATGTATTTCTGGTGCCCATGATGTATAGTACAATAAGAAAGCATCCTGCGGAATGGctaaaaacactgagtgaccCAGAactaataacatttataaaattgtaCTTACTAATTTTCTATGGTATCCAAGAGGTGCCCTGAGgatacagtatattgtacaGTTTGATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28052 lncRNA downstream 21661 8489164 ~ 8489646 (-) True G23643
TU28050 lncRNA downstream 22549 8488514 ~ 8488758 (-) True G23641
TU28040 lncRNA downstream 27278 8479374 ~ 8484029 (-) True tcta
TU28038 lncRNA downstream 27278 8479854 ~ 8484029 (-) False tcta
TU28037 lncRNA downstream 27278 8481051 ~ 8484029 (-) False tcta
TU28192 lncRNA upstream 175080 8691939 ~ 8692150 (-) True G23758
TU28397 lncRNA upstream 392360 8909219 ~ 8990207 (-) True G23952
TU28424 lncRNA upstream 487430 9004289 ~ 9004512 (-) True G23973
TU28428 lncRNA upstream 503210 9020069 ~ 9021558 (-) True G23977
TU28447 lncRNA upstream 553547 9070406 ~ 9070769 (-) True G23991
XM_026921828.2 mRNA downstream 27160 8481049 ~ 8484147 (-) False tcta
XM_026920277.2 mRNA downstream 159674 8343624 ~ 8351633 (-) True arl6ip5a
XM_026921551.2 mRNA downstream 246078 8260485 ~ 8265229 (-) False mitfa
XM_026921537.2 mRNA downstream 246078 8260485 ~ 8265229 (-) True mitfa
XM_026923857.2 mRNA downstream 517684 7991214 ~ 7993623 (-) True gpr27
XM_026912993.2 mRNA upstream 52488 8569347 ~ 8574762 (-) True gnat1
XM_034312653.1 mRNA upstream 52488 8569347 ~ 8572830 (-) False gnat1
XM_026937315.2 mRNA upstream 333123 8849982 ~ 8853110 (-) True inka1b
XM_026913318.2 mRNA upstream 343513 8860372 ~ 8915086 (-) True gnai2b
XM_026917064.2 mRNA upstream 405265 8922124 ~ 8953564 (-) False slc38a3b
TU28035 other downstream 27126 8481051 ~ 8484181 (-) False tcta
TU28036 other downstream 27193 8481051 ~ 8484114 (-) False tcta
TU28034 other downstream 27278 8481051 ~ 8484029 (-) False tcta
XR_004580309.1 other downstream 246078 8262619 ~ 8265229 (-) False mitfa
TU26888 other downstream 2031296 6479402 ~ 6480011 (-) True G22591
TU28673 other upstream 918704 9435563 ~ 9441810 (-) False tusc2a
TU28828 other upstream 1198668 9715527 ~ 9718970 (-) False tnnt2b
TU29080 other upstream 1346508 9863367 ~ 9868278 (-) False G24516
TU29342 other upstream 1972434 10489293 ~ 10490295 (-) True G24760
XR_003403751.2 other upstream 4721845 13238704 ~ 13238806 (-) True LOC113537313

Expression Profile