RNA id: XM_026942709.2


Basic Information

Item Value
RNA id XM_026942709.2
length 8966
RNA type mRNA
GC content 0.46
exon number 22
gene id igsf9a
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 22379920 ~ 22426821 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cgcgtgtgcgcgcgtgtgcgcGTCCTCGAGGAAACTGGGCACACAGAGAGCGAGTCTCGCGCGCTTGTGAAAACTCCGCGCACGAGCCGAGCTGATCAGAGTTTCCGTGGAAACGTTTCACTTCCTGATACACAAAATCCACACATAAGCCGTTTAGTGACCGAGCAGTGAGCCGGGAATGCTTTTCCTTCTGCTGGAAGTTGGATGGTGAGTGtggaggagtggaaggagaaccGGCTCGCGACCGGGAAGGAGCTGCGCGTGCAGGCGGACTGCAGGAATAATCATCacaataaTTATGGAGATGTCTGAGTGCGTTTGAACGTCTGCCATGGCACTGAAGGAGCTTCCTGTACCTGGAGTTAtaattactgctgctgctgctgtggtgCTCTGCGTCTTTGgTGGAGTCGGAGGCGAGCGGTCCACACTGCGGGTGAAACAGGGAGGTTCGGCGCTGCTGACTTGCCCCCTCAGTCCTCCTGCAGAAGTTTCCTCGGCTCCGCTGCACGTAGTCGAGTGGGTCCGTCGGGATTACGACATTCCCATCCTCATCAAGTTCGGAGCACATGCACCACGAGTGCACCCCAGATATGAAGGTCGGGTGTCTCTCGCCAAGGGGACGGCTCTGAGGGTGGAGGGTCTCGTCGTGGACGACGAAGGCTGGTACGAGTGTCGCATCCTTCTGCTGGATAAATCCTCAGAGGAGACACGTAACGGCAGCTGGGTGCTGCTCTCGGTCACAGCCCCACCTGTGTTCAGCGAAACTCCTCCCTCAATCACTGAAGTCTTCCTCGGCAGACCAATCACATTGAAGTGTGTTGCCCATGGCAACCCTCCTCCTACCATCAAGTGGTATAAAGATGGTGTTGTAATGAACCAGACCAGCAATGTGAAGGTTCTGAACGGGAGTCTGACTTTCTCTTCTGcaagcagagagacagcaggacgTTACCAGTGCCAAGCCTCTAACAGCGAGGGAAATGCAATTCACACCATGCAGCtcggggtcaaagGTCCTCCTGTTATCCTGATTCCCCCGACGGACACCGTCCTCAACATATCCCATGATGCCTTGCTGCGGTGCCAGGCCGAAGCCGATCCTCCCAACATGACCTACGTGTGGATGAGAGACGGAGAGAACGTCTACCATATAGAATCTCTGAAGTCTCGTGTGAAGGTGATGGTAGACGGCACTCTACTCATATCCAGATTGATCCCAGGGGATTCTGGGAAATACACGTGCATGCCCACGAATGGCCTTCTGACTTCGCCCACTGCCTCGGCCACGCTTACAGTGCGACACCCTGCGCAGGTGACCCAGATGCCCGAGCGGATCTTCCTCCCTACAGGAATGAAAGGAGTGATCTCCTGCCCGCTGGTTTCTGAACCCCCGCTGCTCCGAGTGGAATGGACCAAAAATGGAAAAGCGCTGGACCTCAACGCTTACCCAGGCTGGATCCTGACAGCAGACGGTTCCATCGTTATCACCACGGCTAATGACGACGCAGTCGGCGTGTACACCTGCACTCCGTATAACAGCTACGGGACGATGGGCCGATCAGAGCGCACCACCGTCATCCTGCAGGACCCTCCATCTCTCACACTCGCACCGCGTAAGGAGTACAGGGCGGAGGTGGGGAGGATGCTGATTATTCCCTGCCAGGCACACGGAGATCCTCCACCTACAGTCACGTGGACCAAGctcagTCCCTCTGTCTCTCGCCCTCTGTACTCTGTATCAGGGAACGGTTCTCTGCTCCTTCAGTCTCTGAGTAAAGAGCATTATGGTGAGTGGGAGTGCAGTGTGACGAACCGAGTCTCCACCATCACggccaccaccaccatcacagtGCTCGgtacGAGTCCCCATGCCGTGTCCTCCGTGTCTGTTGAAGTCGGAGTAAACCAGGCCAATGTGTCCTGGGTGCCTGGATTTGATGGAGGACATACACAAACTTTCACTGTCTGGTtgaagtgtatgtgtgcagtTGAGGAGCAGCAGGAGTGGCGCTCGGCTCCTGGTCCATCTTCCAGCACCAGTGTGTTGGTCAGTGACCTCCTTCCCTCCACCGAATACCAGTTCAGCGTGATGGCTCAGAACAAGCTGGGCAGCGGCCcattcagtgacatcaccactgTCCGAACCATGGACGCACTTCCTACATCGTCCAAGCTGGAGCCGCCCACGCTGCTATCCTTCAACCAGAGCTCTGAGGGTGTTTATCTACGGTGGGCAGTGCCATCGCCTCAGCAGCTACTTATCGACAGTTTCGTCCTCCAGTCACGCCTTGAGGAGGGGGAGTGGTCGACCTTGGATGAGGACATCAGTGCGAATAAGAGTGAAATACTTGTTCAGGGATTACAAAAGAACTGCAACTATGAGCTACGACTCCTGTCTCGCCGTGGAGAGCAGCTGAGCATGCCCAGTCACTCGATCAATGTCTCCACTCTGGTCATGGACATGTATCCTCCAAGTTCACGCCTCCCAGGAGTGGACCCCCAGCCACTATGGGCTGGAGTCGTGATTGGGATGGGTGTCTTGTGCCTTTTGCTTCTTATCGTTTTGGTCACAGTGTGTCTAATTGGCCGTAAAAGAAGCCGGCGACACAGGAAGATGATGCGGGATCACCCCCCTGCTCCATCTAGGAAAGCTGGCTCAGCCCCTGACAGCCCTGACAGTGTACTAAAACAGAAGCTTCTCCCCCTTCGCCCACTGTCcagttcctcctcctcctcagacCACTCCTCCTTGGACAAATCCAACCGCAACGACTGTCCTGACCAGAAACAGCACCAGCTTCCCTGTACCCAACCCCCTTCCCAGGGTTCAGTACCTGAGAATCACCTCCATCGTGCCTCCACTGTGGAGCTAATTCACCGTGGGCCAGATGGCCGATTCATGCTTGAGCCTTATGAAGAACTTGGCACTTCAGATTATGCTTCATCCAAGCATGAAATGTCAAGGCAAGGCTTTTCCCATTCATCTGAGCGACCTGGAGATGCCACACTTCGTAAATCGCAATCTTTGCGCTCTTACAGGAGTGAAAGAAGGCATCCTCCTTTTGTCCTTTCTGTGGACATGCCCGCTTGTGGATTGGACATTTCTCCTTCTGGCAGAGCGCAAACGTTGCCCAACTATGGCTGCTACTCTGTGTCTCTGGGACAGGAGATCTCAAATAGGTCGAGTCTGTCCTCCCAGACCAGCGGTTCAGTTCTCTACTCACCATCGGACAACTGTTCAACATTAAAGCATGGCGGCACTCATTCCACAGCCAGCACACTTGTTCTGCAAATGGAGCATGAAAGAGAACAAGGCAACCTTAGCCGCTGTCTTAGGCTGGcccgagagagagaggagctggAGCGAGAGTTGCGTAAGTACACTCTGGATCGGAACTTTGAAGTCAAGAGAGGTGGGTCACTCCGAGTGGAGTGCAAGAGGGAAATTGAAGATAATGTGGAAACAGCCTGGAACAGCAGAGGAACAGGATCCTTGCATGTTACACAACTGTCTGACAGAGGGCAGTGTCTATCCAGTAACACTATTAATCCAAGAGTAAGAGCTTCCTCTTGTATTCCGTGGGAGGCTGGATATATAATGTCTCCCAGTAATCTTGTACAAGCACAGAATTGCCACGAAAGGACTTTTGAGTGCCTGAAGGACTCTCATTTAAACCAAATGTCAAACCACAGGAGGTCTAAAAGTCTAGAGCGAGGGGAGCACCAAAGATCACGTGTTAAAGATCAGCAGCGAAGGCGAACCATGACTGAAGGTGCCCCTGTCAATTTTGATAATAAACCTTTAGACCAAACATTGGAAAGATCTCATTATAGTGTGGATGGCAGCCTGAAGAATCCTGGAGCCTACAGTCGCAGTCAGCAACATATTTCCCCAAGAATGAGTCACTTAGGAGATACACAGCAAGaaggaaaagcagagaaaagcAGACGGCAGGCTGGCTGTGCAACTGATTATGTGGAGATGTGTGTGGATGAGCCAGAGATACAGGCTCAGACTCCCCTAACAAGGTTCATGCCGCGGTCCATGGATTCTCAGAGACCCAGTTTATATCAGCTGCAgaaggagacagaaagacaatCAGGGTACAAAACCATTCCGAGAGGCTTGAGAAGAGACTTGGAGAGGATGAGTAATGGGTCAAGCAGAACCCTTCCTTCAAAACATCGACAAAGACCAGCTTTCCAAGATGGTCTTAGTGGGGGTTCCCAAGATATAAATCACCACAAAAGTGCCCCTAGTTTGGATGAAAAAATGTACAGTGAGCAATTCCTGCCCCCTGATGCTTGGATTGACTCGCTAAGCATGGGGCAAAATTCCTCCATGTCTCCTTTTCCAAGTGGAGAGGGGAACCGGATGACGCAGAGTCAAGAAACTGAAACATGTGCACCTTCAGAAATTCAGCATCAAGAATCCCATCATCTGCAGGACTCTAATAGTGCCTCTACTGCTGATCAAGACTGTCAGCGCCACAGTCCACCTTCCATTCCGTTAGAGGATTCCAGCTGGCCTCCAATGCATTGCTACTCCCCAGAACCCGAGGGAAGTTGCCGGAGCTATGCCAGCCATAGCAGTGGCAGAGGAAGTCTGGATCAGCCGAGCAGCAGGCAGTCTCTGTCTTTTAGCCCCCCTCTAAACAGCTCCCTAGAGATCCCTGAGGACAGCGATAGAGATGAGGCTGGGCAGCGCTCGCTGCAGGAATGCTCCAGGAGAGATTCCGTTGATGAGAACTATGAGTGGGACTCACACTACGTCTCCATGAACTCTAATGACCTGAAAACGTCAATCAGCGCAGTCTGCCTGCAGGGGGAGATCCTGAACAAGGGAAGACGGAGGAGTGCTGTGAACGACAGCAGGCTGGCCTTAAAGCAGGAAAAGAGAGgtctGTATCGCTCGGTTAGCATTTTGCCCCCCAGCTGTGAAGAGTCTCTCCTGGAGCGGGAAATTCAGCATGGCACCATGTGCTACCCCGACCCTAATCCTGATGCTGATGCTGTGCTATTCTGAGTCTTAAAGTGTAAAACAGGATCCTCTGCACCAAACATGTTGGACCAGAGAGCAAAGATCTTGTCGTCACACACCTTGAAACACGAGAGACTCGATGACGTTGATGAGAAATcaacaaagcaaaacagaacCAAGATGCAGAACTTGATTTTTACCAGTTTTTGCTCTCAGTGTTCAAAGAGTTTCCTCACCACAGATAAGCAGTAAAAATGTTCGCTTTCCGTTCCGCTTTATGCGACTTTAACGCCTGTTAGGaggaaatatgcaaatgaagacAGCCTGATATTTTCCTGGACAAGTCCAGCAGTCATGACATCTCCAGTGACATTTGGATTCAGGATAATTTCACCGTGGAATTGAGGAGAGCGACTCTGATTGGTTGCACTCCCCACACTCAAAGGATGAAGGAAATGAATCCCTCGTTTCATCACTCGTCTGAGATTACACCAAGGAGGAAAGTGACTCAAGAACCTGCTCTAAATAGGCTGCTCTGCTCTTTTGGCACTGTGATTCACACTTCCTGTATCTGcgaatgataaaaaaaaaaaaaagtttatgccAAGGATGGAACAGGTCTAAATCGAGGAAGGTCGCCAGTCCAGATGGTCAGAATCGGGTatttttgagtgtttcagaTGCAGTGTGAAGCAAACTTTCTGCATGGTGGTTAGCTGTGGACATCGATATCGATCTGTGCTTGGAGACAGAGCAGTGGGATTAAAGGCCTGGTCAGTTATGAGGAAAAGTTCTAAAGCGAAAGCTTTCTTTTTGCACTCATTGCCTTTGAGAATAACAGATGAGAGGATGTGAACTGTGATTGGTGCTCTGAGGGCGTAAGAGGTGATCCATTATATAATGTGAAAATGGCTTGATGGAAGGGTTTgctttttcaaaacaaaacaaaaaaacttacaTGAAGGATTACAGTGAAAAGGACAACCAAGATCAGACTTAACTGTTTACTTCACATTTTTTACTCAACATGAAtatattcactttatttttcaaatttgcTTTCAAATACATtaagcctcatttatcaaaccaTATAGGaatagatttatttgtaaattatttgcaggggcatttacacaagaaatgtggtttCATTGTATACTGTatcatttgtataaatttgtGTATAATGAGACTCATTAATGGGAACCTCGACTGATCAGCTTCAAAACGTATAATAATTGTCAATGCGATTTTATATACGGATTACGCtatcaagtttaaatcacttatttatttaaattccacaccaatttaatgaatattttgtgaaaatcagttGCTTGACATGATAGAAAACATCTCTAAATTAATACTAGCCATTCCATTAAAACATAAGTAATGGAGCCttaaaaaaagaggaggagttagtgtgtgtctgtggtggcTGAAgcactgcaatggctgagctgcattattggattTAGAAGATTTAGTGCATGTCGCACATAGAAGGCTCTCTTCCGCTGTTTAGTCAGCATCTTGACGCTCTCTGTGAGGTTTgcattttatggagttttgtaggtGTGGCTGAATGTACATGTGGCTTGAACACGCTCCTTAATTTACAGATGATTGGTGGTTATCAACAAACGCACGAGTACAAAAAATATCAGCGTTATTCTGTGTACTTTTTGTTCCAATATTTCGTTGGCCTACAAAAagaaagattgataaatgaagcccactGTGCGATGAACCCTGTAAgaacagcaatttaaaaaagttagtGAAAGCACACACTTTGCCAGACATAATTCTTTTATAAAGACACAGGATGTGGAACAGTGCATTAAATGTCAGCTTAGTTTCcaggggaacacacacacatacacacacacacacaccctttaaaCTCTGTGGAGTGTATAGATCTGCACTGAGAGCAAAGCACGAAATGTCTCTTGTGGTATCATCGATATCTCGATTGCAGTGGTCATTAAAGTAGCCACACCAAtcgcaattttttttattttaacttaagaAGCCTGGGAAGAGATGGAGCTGTACGACTTAAAACATACAATAGGTGGAACATTACATATATAGAATATTTTGCTCAGTTGTCAAAGACTGTAGTGTATCACATAGTGCAGCGTTTTCCAAAACCGTCCTCTGGGATTCCAGATCCAAAATTTCCATTCATCTGTTTTCAGCACTGAAAgctgaaaatgagcaaaaacatGGAGTGATTTGGGAAACGCAGACGAGCCTCAGTAAGTTGCTGAAACAGAGTCATTTGTCTTTGAGGGTTTTGTATAAGAGAGGATTAAGTATAATTACACATTGTAGGATTTCACAGTCAGTAATCTTATGTGAAAGCTTCtgtcactgtaaaaaaaaggaaaaaacaacttGACAGTTTCCAttttttgtaataattgtaGCTCACTCTGTTATGTAGAATTGAAAATTAAGATTAAAGAAAAGCCTGAAGACAATCAAAGACGAAATGATAGACATCTTCAGCATAGTCATTATTTTTATCCTGGTtcataacttttttaaaaactcttttctttctttttttttttaaacctgccACCATTATCACTCCCACAGACCTCATTAGCAATTTTTTGGACTGttaaagacagaaaaggaagaaaaaaagggaataaatagaagagaaagagcaaatgaatgaataaaaaaaattagaagaaATTGTAATGGTAATGTCCATCAAGAAATCAAACACAATCATGGAAAAATCTCTAGACTACACAGGCTGCGTGAACAGATTATGCATCTAGGCTATTAGCTTTTCATTCACTGTTATCTGGCGGACAAGcaagttccttttttttctttacttcacTCATCTAACAACCAGAGAAATAAACCTTCCTATCAACTTTCGCAAAGCAACACCTTTaatctgatttgtttgtttatacatAAACATGCTGCAACTAGTTCATATATTTCTCAGTAGTGCTAAAACAACTTGACGCTAATTGTTTTCGAATCTTCCCACCTCCTGCGCTACTCGCATGACCCCAGGATGCgctcttcctttttttattagccataataaaataatcagcttgAACAGATGCTAGACAATCATCAGAATCAGGATGTGGAAAAAATGACATACTGTAAATGAGCAAAAGAGAGCACAGTGTAGAGAAAATAAACTCTAACGCGAGACAGTCACTTGGCATttctacatgaaaaaaatgaagccgCTAGCTGAAAGAGCTAAACACTgtgtttttatgttcttttttttaacataatgatTATTCAGTACTTACAAGAGTTTCCTCTTATTCAGTTCTGAGCAGGGGAAATACGAACAAATAAATTAGCCAAGAAAATGTCATGTCTTGAAAAACCGTATGTTTTTCTCACAGCTATGCTGAACATGAACGCTGTGCTTGCTTCTGCAATCCTGCGATGTGAATCAGTAATACTGCTGCCTGATTAAGCGGATCCTGTAATCCTGTCCTTTAAAAATTCCCAGCAGCCCCTTCAAATCATGAAATGAGAAATGATGTGTAAAATGAGTTTCATGAGCTGCTTTACCTACACTGCAGACAGCGTACAAttgtttcattctgttttttatgGTAAATTAGGTACACGATGCACGCTTGCTTCAGACCAACTGTGATCAACGTTTACGCTAAATCAGGAGTGTTAATGAAGTGTCACGTTTCCATCCAGCTTTATTTTCTAGCAGACACTGAAAATTAGTCACGAATGGGAACAGATTGAAACTGCGTTTCTCAGCGTATTAAAGCCATTTCGTGTTTGTATGTAAAGCACCAAACCATGTAAGCCATATTGAAATGCATTTTACACTatagctctgttgaattctcgattctgattggtcagaaggtgttgattaagtttctataacagcgctcattctaatatgttattgtttctatggtaacagctcattcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU323778 lncRNA upstream 341771 22037839 ~ 22038149 (+) True G273226
TU323780 lncRNA upstream 348394 22030600 ~ 22031526 (+) False LOC113544129
TU323810 lncRNA upstream 397729 21981979 ~ 21982191 (+) True G273258
TU323800 lncRNA upstream 417053 21962664 ~ 21962867 (+) True G273248
XR_003404485.2 lncRNA upstream 887844 21488112 ~ 21492076 (+) True LOC113544190
TU324041 lncRNA downstream 135283 22562104 ~ 22562325 (+) True G273473
TU324179 lncRNA downstream 374260 22801081 ~ 22840120 (+) True G273600
XR_004579839.1 lncRNA downstream 565721 22992542 ~ 22994797 (+) True LOC117599377
TU324282 lncRNA downstream 565735 22992556 ~ 22994510 (+) False LOC117599377
TU324287 lncRNA downstream 610588 23037409 ~ 23038616 (+) True G273683
XM_026942855.2 mRNA upstream 5050 22369256 ~ 22374870 (+) True tmem230a
XM_026942647.2 mRNA upstream 28204 22315294 ~ 22351716 (+) True dpysl2b
XM_026942648.2 mRNA upstream 28204 22321089 ~ 22351716 (+) False dpysl2b
XM_026942658.2 mRNA upstream 69367 22291081 ~ 22310553 (+) True bnip3lb
XM_034312836.1 mRNA upstream 90887 22272066 ~ 22289033 (+) True ppp2r2ab
XM_026942744.2 mRNA downstream 195608 22622429 ~ 22665570 (+) False lrrtm4l1
XM_034312793.1 mRNA downstream 280140 22706961 ~ 22766275 (+) False vsig8a
XM_026942740.2 mRNA downstream 280142 22706963 ~ 22766275 (+) True vsig8a
XM_026942737.2 mRNA downstream 318249 22745070 ~ 22766275 (+) False vsig8a
XM_034312791.1 mRNA downstream 323884 22750705 ~ 22766275 (+) False vsig8a
TU323909 other upstream 5045 22369274 ~ 22374875 (+) False tmem230a
TU323423 other upstream 901040 21476112 ~ 21478880 (+) True LOC113543995
TU322810 other upstream 1836966 20540325 ~ 20542954 (+) True G272408
TU322768 other upstream 1950777 20423399 ~ 20429143 (+) True G272374
TU322750 other upstream 1980973 20398280 ~ 20398947 (+) True G272367
XR_003404475.2 other downstream 195607 22622428 ~ 22665570 (+) True lrrtm4l1
TU324289 other downstream 698546 23125367 ~ 23129320 (+) False lhx6
TU324492 other downstream 838632 23265453 ~ 23274170 (+) False rc3h2
TU324491 other downstream 894750 23321571 ~ 23360503 (+) False LOC113543986
TU324879 other downstream 1676268 24103089 ~ 24104595 (+) False hsdl2

Expression Profile