RNA id: XM_026942727.2


Basic Information

Item Value
RNA id XM_026942727.2
length 1751
RNA type mRNA
GC content 0.43
exon number 8
gene id prkab1a
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 21435902 ~ 21445264 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggcaaccctgcataGCGCTGCAGGGGGCGGGGCTGTGTTGATGTCTTGCAGAGAAAAACCGACgtggatttaaaaataaaaataaaataaaaaatgaaatgaagtccAGCACCTGTTAAAACTCacgtataaatatatatttttgcggTAAAGAGCATAATTGAGGTCTTATCTGCTGAGCACACGGCTCTACGTGTAAAGGCACCATGGGAAACACGAGCAGCGAGAGGTCGGGTGTGGGGCAGGGCGAGAAAGCCAACCGCAGGGACAGCCGTGGGGCTAAAGAAGGGGATCGGCCCAAAATCCTCATGGACAGCCCTGAGGACGCAGATATTTTCCAGGGAGAGGATATTAagGCCCCGTTAGAGAAAGAGGAGTTTTTAGCCTGGAGGCAGGACCTCGAGTCTGGTGATAAGGAGCTCTTGGCACGACCCACAGTGTTTCGTTGGACAGGTGCCGGAAAAGAGGTCTATCTCTCTGGATCCTTCGACAACTGGGCAAATAAAATTCCTCTAACCAGGAGTCAGAACAATTTTGTCGCGATCGTGGACTTGCCTGAAGGTGAACATCAGTATAAGTTCTACGTGGACGGACAGTGGACTCACGACCCCTCTGAGccTGTAGTGACCAATCAGCTGGGTACGATCAACAACATCATCCAGGTGAAGAAAACCGATTTTGAGGTGTTCGATGCTCTCATGGTGGACTCGCAGAAGTGCTCGGATATGTCAGatctctCAAGCTCTCCTCCTGGGCCATACCATCAGGATGCTTACGTACCCAAACAGGATGAGAAGTTCAAGTCTCCACCCATCCTCCCTCCTCACCTGTTGCAGGTCATCCTCAACAAGGACACGGGCATCTCATGTGACCCTGCGTTACTTCCTGAACCCAATCATGTGATGCTGAACCACCTGTACGCTCTGTCCATTAAGGATGGAGTAATGGTTCTTAGCGCCACTCATCGCTATAAGAAGAAGTACGTCACCACCCTGCTGTATAAACCCATCTGACACCAGTGGCAATTCTTTCTGCTCATGACCTCTACCACACCTGCCAAGCTTCTATCCACTCCACTACTGAGAACtaatgtgtagtgtaggtgtcttttcctgtctgtttttttttgttgttgttgttctgatTTAATATATGGCACTGGTTGCCAAGAGCTAACCATTCGGATGCTGTAAAGtgaatacattatatattaaaacatcCAGCTTGGTATCAAAAGACCAATAACATAAGGAGGTGGCATGGAAGAGACCAAAAATATATGTAGATTCAGATATTTCAAGTAATATCTTAAATAAGGACTAAACACTTGGATGTGTGATgtagctgagttactgttaccacgctgaagttgattattttccagttacggcatgtcttgaagtgttttattcctcttataccattgagttttgccaatgattacaaatttcattttattaaagaatgacacatcatactttttatccattcgtagttacatttaattttgtggaacatgatgaaaaactgcaaagcgtaaactcctcaaTCCTGAAAAtgtctttacctctgactgttacaaagtgccaACACTGGATACTCGTTTTATGAATGGTAAATTTACAGAAATCTTTACCATatcaatgtttttaaattctttcATGTGAAGcatccaccgtacaagtccgtattagaacaagcatgttaatataaactaatataaacaatataaacataaatataaatcaaat

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0016301 kinase activity molecular_function

KEGG:

id description
K07199 PRKAB; 5'-AMP-activated protein kinase, regulatory beta subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU323409 lncRNA upstream 74260 21359549 ~ 21361642 (+) False LOC113544125
TU323264 lncRNA upstream 445351 20990343 ~ 20990551 (+) True G272803
TU323226 lncRNA upstream 504319 20927622 ~ 20931583 (+) True G272770
TU322887 lncRNA upstream 686255 20749361 ~ 20749647 (+) True G272470
TU322859 lncRNA upstream 698402 20716511 ~ 20737500 (+) True G272450
TU323425 lncRNA downstream 34636 21479900 ~ 21488039 (+) False G272940
TU323426 lncRNA downstream 34636 21479900 ~ 21488039 (+) True G272940
TU323428 lncRNA downstream 39887 21485151 ~ 21492672 (+) False G272940
XR_003404485.2 lncRNA downstream 42848 21488112 ~ 21492076 (+) True LOC113544190
TU323800 lncRNA downstream 517400 21962664 ~ 21962867 (+) True G273248
XM_026942484.2 mRNA upstream 11055 21393821 ~ 21424847 (+) True phf24
XM_026942486.2 mRNA upstream 11055 21393821 ~ 21424847 (+) False phf24
XM_026942774.2 mRNA upstream 74158 21359519 ~ 21361744 (+) True LOC113544125
XM_026942771.2 mRNA upstream 86079 21337235 ~ 21349823 (+) True pigo
XM_026942773.2 mRNA upstream 86079 21337235 ~ 21349823 (+) False pigo
XM_026942860.2 mRNA downstream 1971 21447235 ~ 21452073 (+) True LOC113544185
XM_026942859.2 mRNA downstream 1971 21447235 ~ 21449235 (+) False LOC113544185
XM_026910063.2 mRNA downstream 17279 21462543 ~ 21466143 (+) True LOC113523962
XM_026942513.2 mRNA downstream 23148 21468412 ~ 21473118 (+) True LOC113543961
XM_026942559.2 mRNA downstream 30823 21476087 ~ 21478563 (+) False LOC113543995
TU322810 other upstream 892948 20540325 ~ 20542954 (+) True G272408
TU322768 other upstream 1006759 20423399 ~ 20429143 (+) True G272374
TU322750 other upstream 1036955 20398280 ~ 20398947 (+) True G272367
trnae-cuc_36 other upstream 1587076 19848755 ~ 19848826 (+) True trnae-cuc_36
XR_004579782.1 other upstream 1605634 19825962 ~ 19830268 (+) False LOC117599326
TU323423 other downstream 30848 21476112 ~ 21478880 (+) True LOC113543995
TU323909 other downstream 924010 22369274 ~ 22374875 (+) False tmem230a
XR_003404475.2 other downstream 1177164 22622428 ~ 22665570 (+) True lrrtm4l1
TU324289 other downstream 1680103 23125367 ~ 23129320 (+) False lhx6
TU324492 other downstream 1820189 23265453 ~ 23274170 (+) False rc3h2

Expression Profile