RNA id: TU398126


Basic Information

Item Value
RNA id TU398126
length 3655
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G336202
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 889818 ~ 906892 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acatcccagaagatattggGAAAGTTTGTACTCCCAGACGTGTTAGTTTggattttacatcaaacatttgaatcattatcatgattttgtgtacaagacgactatagaagtgaatttccgtttctagcttttccccaaacagcaaacCAGCGagtggaggcacaggagctctcaggagagcatctgcttcattctgctcattttctcaccaatcaTCTGTtcttaagatcattaaaagcttcatatccACCattttgggcttcacctggttTTTTCCCACCCAGGAGTGTGTAGGGTGAAGACCTTCTCTACGGtatagaacacacacatgtggaAAAACTAACCTCGCCTGAATAGTACAATAGATgatgaacagggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgcacactGAGGGACAGGCGGATGAAACCGTTTCATGAAGACTTTATTCATAAGTGCTTCAGTTGTTAAACTCCGTACAGAGATGGAAAAGGACAGAGGGAGAGTTCGGACTGATCCAAGttcgagacagagagagagagatggtacGGTCCGCTTCACTCGTAGATCCAGTCGTAAGCGCAGCTCTTGAAGGAGACCAGCTCCTCGGGTTTAAACCACAGAGCGACCTCTTTGTTGGCGCTTTCCACAGAGTCGCTGCCGTGGATGATGTTCCTGcgcgacgcacacacacacacacacacacacacacacacacacacacacacgttatttacagctgtgtcccaaatacacacacacacactgacgagtgttatttttcttcatgctcatggtgtattacccataatgcaccttCATAAACACCAAGAACACTACTTCCTTTTCTAGCAGTATTTAAACTCCTCTAGTTTTCTTTCTCAACTGTAAACTTACTCTGACTACAGAATGTTAAAACTGACTGGCACTAGGACCCTGCAACACGCTTTCTACGTTCAGTACAGAGCCTCAAGATGGACGactggaaataataataataataataataaactagaAATAACTATTTTACACGACACCCGTCAcaggctgcgtcccaaaccacatacatAAAGCTCTTCACTTACAGTCACAGTGACGGTGAATGAATCAGGAGGCGTGACCTGAACACCTGTAAGCACACCTGTAATTAATGAGCTCGTTAACTCACCTGCCCACTTCGATACAGAAGTCTCCTCTGATGGTGCCGGGCTTGGAGTCGGCCGGGTTCGTCTCTCCCAGCATCACACGGCCCGTCTTCACCACGTTCAGACCCTcccacacctcacacacacacacacacacacacacacacacacacacacagttagctTTATCCTGTGCTAATCAGGAAGACTGTGCTGTACAGCATTACAGGTGAACTCCCTCACCATGGCGACGACGGGTCCGGAGCCCATGTATTTGACGAGGCCGGGGTAGAAGGGGCGGTCCTTCAGGTCGATGTAGTGCTGCTTCAACAGCTCCTCAGAGGCctgcgagacacacacacacacacacacacacacacacacacacacacacacacacacacacgttaaagctgtaactaagttttccgacatcttcagcaggacagaggagtttacgcttctttgcggtttcacagtaacaagcggaacaagctgcgattatttttttaaaatcttaacttggagagagagaataaagagactctggtgagggaacgagtgtttacagctgctgtaacataagtgacaacaggaactaactcgttccGCTGATGTttactataaacggataaaaactaCCATGTCACTCTTTATTAAAGTGTAAATGTCGGTAAgctgctgtggtaaaagaggaatagaGCGCTTTGGGGTGAGGACAGTAGTTGTGTGGTGTTGATTTTTCCTGATAGCATCCTGCCCTGAGGAGGTTTATTCCTCGTTTCGTATAATTAGCGTTAAAATCATTACGCCGTTAGCGGATTAGCTAGCTGCTGAGTAACCAGGACTCGGAACAGGAAGTTCGCTTGAGCCACGTTAATGTAGCCACTGAGTAATTAGCATCACGGCTAACTAgcaggacgaggaggaggagtatCAAGTGTATAAATCCCACTTAATGTTGACTGTTTAGTAGCGAGAGCGCATGCGCTAGCTGTTAGCACTCCGGTTAGCACCCAGGCTAATGATTAGCGTGTTCGCTCCACCACTAGTCCTGCACCGACGCTAACCGCAGTGGAAGCGTGTGGTGGAGCGGTTCCTGTTTCCCCCGTCAATGCCAGACCACATCACCGAGTCAGAGCAGCTGGAGTAAGGAGGGGGAGGAGTCACGCGGCAGAGTGGGTGTGGCCtcaacacacagacaggtgCGAATTTGCATAAATGGAAACGAGCGTCTGGAGTGGAAACGTTAGCGTGCGGAGGATCAGACCGCAGacgtggacacacacacacacacacacacacacacctgcaggaACTTGAGGGCGACGAGGCGGAAGCCTTTCTGCTCGAAGCGTTTGATGATGTCACCGATGAGTCCTCGCTGAACTCCGTCAGGTTTGATGGCGATGAAGGTGCGTTCAGCCTTGGCAGCCatgacactgaaacacacacacacacacgctttaggTTTAAAGTTGAAAAACTTCAAAGAGCCATGTTTAATTATCtaacatttactttaatattaaaaataaagatctTAAGAAGGCTTGGGAATCACAGGTGTGAATCTAGTGCGTAAAAAGTCTCTTAAATATGCAACACTCTTCTTATTTCTCTTAACCTTCCACTGATCGATAAAACTACACCGCTTCCTGTGCTAATGTAAAGCTACAGCGTGGTGCTGCTCGGCTCCGAGACGCAGCGTAAAAGCCGTTATAAGGCTTCATAAGCAGGTGTTCACTTAATAACTGCTTATTCATTCCCCTATGTAGAGCATCTTTACAGGGAAGAGGAGATATCTGAGATTTGGGCAACGCTGGAGTTTATCAGAGAAGGAGAATGTAAACTGTAATGAGGTTTATCAgcattatataaaacacacacacctgataaaCAGGGACTTTACTGTGTGTATGCTCTAGCGGTTCATTTCacgtaaatgtgtgtgtaagtgtgttctctcacacacacacacacacacacacgctatatATAAGAGGAGTAAATATAGTGCCGGGAGCTTTAACGTTCTCGTTACACTTCAGCACTTTCTGATGAACCTCCTGCTCCTGGTTTAATTAGGGGTTTAATTAGAGAAGCTCATATTCAGCGTATTCAGCAGTGCTTATGCGCCATCACTGCTTAGATCTGCTCTCGGATTTATATACGTGTAACGGCAAGCATATGGATTTTATCTCGACCAGACTGTACACTAAACTCactacagtgtttattactgcaAACAGTTCCAGACATGGTGTAGTGatcatttattatattctattattacgcgtgtgtgtatctatctagttcattgttgcactgtgggacgaggcactaaggacaaacatttcactacattacatcacatgtatataatatatgtatgcGACAAATAAAGAGCCTTGAACTTTGATCCACTTccccctacatagtgcacatcTATAGTGAAAGAGATTTGGGTTCAAGCCAAAGCCAAAGAcattgtgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403018.2 lncRNA upstream 110792 775875 ~ 779026 (+) True LOC113528997
XR_004577067.1 lncRNA upstream 110792 775878 ~ 779026 (+) False LOC113528997
TU398085 lncRNA upstream 116990 768195 ~ 772828 (+) True G336167
TU398045 lncRNA upstream 245680 643931 ~ 644138 (+) True G336143
TU398043 lncRNA upstream 257517 631774 ~ 632301 (+) True G336141
TU398135 lncRNA downstream 11743 905239 ~ 906488 (+) True G336209
TU398176 lncRNA downstream 112736 1006232 ~ 1008093 (+) True G336241
TU398178 lncRNA downstream 122476 1015972 ~ 1016631 (+) True G336243
TU398148 lncRNA downstream 126743 1020239 ~ 1064155 (+) True G336214
TU398184 lncRNA downstream 134560 1028056 ~ 1127409 (+) True G336246
XM_026917884.2 mRNA upstream 72575 806309 ~ 817243 (+) True si:dkey-89b17.4
XM_026917885.2 mRNA upstream 72575 806311 ~ 817243 (+) False si:dkey-89b17.4
XM_034298470.1 mRNA upstream 73348 806305 ~ 816470 (+) False si:dkey-89b17.4
XM_034298471.1 mRNA upstream 73348 806305 ~ 816470 (+) False si:dkey-89b17.4
XM_026917889.2 mRNA upstream 178309 706407 ~ 711509 (+) True LOC113528988
XM_034298638.1 mRNA downstream 270 893766 ~ 906770 (+) True utp18
XM_034298503.1 mRNA downstream 17076 910572 ~ 950118 (+) True LOC113529000
XM_034298639.1 mRNA downstream 55979 949475 ~ 951383 (+) True LOC117595860
XM_034298749.1 mRNA downstream 130982 1024478 ~ 1033504 (+) True ube2m
XM_034298746.1 mRNA downstream 145469 1038965 ~ 1061366 (+) False kpnb1
TU398091 other upstream 95123 794117 ~ 794695 (+) True G336172
TU398067 other upstream 140144 739369 ~ 749674 (+) True G336161
TU397921 other upstream 602603 286849 ~ 287215 (+) True G336034
TU398147 other downstream 80173 973669 ~ 976321 (+) True G336213
TU398245 other downstream 239492 1132988 ~ 1136107 (+) False mllt11
TU398302 other downstream 376313 1269809 ~ 1335530 (+) False G336334
TU398322 other downstream 432320 1325816 ~ 1327507 (+) True G336350
TU398432 other downstream 763821 1657317 ~ 1659459 (+) True G336433

Expression Profile