RNA id: TU398178


Basic Information

Item Value
RNA id TU398178
length 579
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G336243
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 1015972 ~ 1016631 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGAGAGTACTGGGAGTACTGAGTGTACTGGGTATACTGGGAGCACTGGGTGTACTGGGTATACTGAGCGTACTGGGAGTACTGAGCGTACTGGGAGTACTGGGTGTACTGGGAGTACTGAGTGTACTGGGAGTACTGAGTGTACTGGGTATACTGGGAGTACTGAGAGTACTCAGAGTATTGAAAGCAATGAGAGCACTGAGTGTACTGAGAGTAATAGTAATGAGAGATGAGCGTCATGATGCTATCCCACGGTGATATTAATAATACCATCGTATTACCCGACACTAcagtctgcacacacacttctactgcaCAAGCAGGAAAAAAACGATTCAGAGACGGAAATGAAACGAGGAAGAGGAACAGAAAAATACCCCACATCTAGACCGCATTAAAAAACCAGACATTACATTACAATGTTCAgatattataataacaataataataataataatagtaataataattgtaaattatttgtttataatcaGAGTTAAAATGCTTAATCATCAGCCATGTCCATTATACATCATACCTTATTATTAAAATCTGTCTAATTTTCCTCCTCAGTGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU398176 lncRNA upstream 7879 1006232 ~ 1008093 (+) True G336241
TU398124 lncRNA upstream 109080 890196 ~ 906892 (+) False G336202
TU398135 lncRNA upstream 109484 905239 ~ 906488 (+) True G336209
TU398126 lncRNA upstream 122476 889818 ~ 893496 (+) True G336202
XR_003403018.2 lncRNA upstream 236946 775875 ~ 779026 (+) True LOC113528997
TU398148 lncRNA downstream 3608 1020239 ~ 1064155 (+) True G336214
TU398184 lncRNA downstream 11425 1028056 ~ 1127409 (+) True G336246
TU398182 lncRNA downstream 101012 1117643 ~ 1139760 (+) False G336245
TU398183 lncRNA downstream 101012 1117643 ~ 1152914 (+) True G336245
TU398244 lncRNA downstream 105636 1122267 ~ 1123573 (+) True G336295
XM_034298639.1 mRNA upstream 64589 949475 ~ 951383 (+) True LOC117595860
XM_034298503.1 mRNA upstream 65854 910572 ~ 950118 (+) True LOC113529000
XM_034298638.1 mRNA upstream 109202 893766 ~ 906770 (+) True utp18
XM_026917884.2 mRNA upstream 198729 806309 ~ 817243 (+) True si:dkey-89b17.4
XM_034298749.1 mRNA downstream 7847 1024478 ~ 1033504 (+) True ube2m
XM_034298746.1 mRNA downstream 22334 1038965 ~ 1061366 (+) False kpnb1
XM_034298745.1 mRNA downstream 22335 1038966 ~ 1063015 (+) True kpnb1
XM_034298747.1 mRNA downstream 49136 1065767 ~ 1076546 (+) True LOC113529039
XM_034298748.1 mRNA downstream 49136 1065767 ~ 1076546 (+) False LOC113529039
TU398147 other upstream 39651 973669 ~ 976321 (+) True G336213
TU398091 other upstream 221277 794117 ~ 794695 (+) True G336172
TU398067 other upstream 266298 739369 ~ 749674 (+) True G336161
TU397921 other upstream 728757 286849 ~ 287215 (+) True G336034
TU398245 other downstream 116357 1132988 ~ 1136107 (+) False mllt11
TU398302 other downstream 253178 1269809 ~ 1335530 (+) False G336334
TU398322 other downstream 309185 1325816 ~ 1327507 (+) True G336350
TU398432 other downstream 640686 1657317 ~ 1659459 (+) True G336433
TU398943 other downstream 859643 1876274 ~ 1945866 (+) True G336822

Expression Profile