RNA id: TU398210


Basic Information

Item Value
RNA id TU398210
length 1189
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G336261
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 1756185 ~ 1757404 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGGGAGAcgtttttgtttgtctttgtcattttctttatttggcTGAAATGAACCCGTCCCACATCATTAACGCTAACAGTGACACTAACACGCTGTCGTGTGGTACAGAAACACGGCTGGAACTAACGCAGGAGATGTTCATTTACCCTGATTAACTGAcctgagccacacacacacacacacacacacacaccggagaCAACGACGACGACGACGAAGACGACAACACGGCACACTGACGTAGAGAAAACCCTCAACAGTAGCGCGGAAAGAACGGCGTTAGAGTCGGACGCCGGAGCGCGTGACGCCGCTTTCTCCGACGTTCCCGAGAAAAAAGATGAATCTAAACAAACATTCGTGCGATTTCACAACAAATCCAACACGGGGTGCGTTTCCGAATTTGAGAAGAAATTGAATGCAGACGTTTACCTCAGGCTTTCAAATCTGATCgctaatttaacaaataataaagCTACACGTTTCACCTCCACAGATCAACACTTATCCGTCACTAAAAACTCGTTCTCACGGTAAACTGACGCCTGAGAgacacctttttctttttctttttttttttaagtcaagctaccaaaacagaataaaaaaaaaaaaaaaaaaccCAAGAGTCACCTCAGCTCGCTTcacttaaaactgaaaaatcaCAAACGTTCTGATGAAGTGGTCGAGTTTTTGGCGTTCACACGCGGACGGGTGTGTGCCGATCACCAGATATTCCAAGATAATAATCTGATCATCGCACTTAGAAAATATCGTCTGTAAATtgttaaatacaataatatcaTGAACCACAATAAAAAGTTTGGCGATTATCACAATACAGGGATTTAATATCGATATATCGGTTCAGACTGGAGTCCGATTTCAGTCTGAACCTCAAAGCAAactgtctctccgtctctctctctcacacacacacacacacacacacacacacacacacacacacacacaccccgaaaCAACGTTTACATGTAGGTataaagcgcacacacacacacacacacacacacacacacacacacacacacacgcgtgtccagtttattaaaaatgatccCTCCCTCTAGTTTGTGCCCCGAGCAATTACCAGATCTCCAGATCAACCCCAcccttctacacacacacacacacacacacacacacacacacacacacacacacacacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU398200 lncRNA upstream 15178 1738163 ~ 1741007 (+) False G336256
TU398201 lncRNA upstream 15178 1738163 ~ 1741007 (+) True G336256
TU398446 lncRNA upstream 75889 1675057 ~ 1680296 (+) False polr2k
TU398224 lncRNA upstream 167891 1586247 ~ 1588294 (+) True G336275
TU398401 lncRNA upstream 175885 1579795 ~ 1580300 (+) True G336406
TU398493 lncRNA downstream 63728 1821132 ~ 1842536 (+) True G336481
TU398494 lncRNA downstream 85185 1842589 ~ 1842970 (+) True G336482
TU398980 lncRNA downstream 208572 1965976 ~ 1984496 (+) False G336849
TU398979 lncRNA downstream 225025 1982429 ~ 1984496 (+) True G336849
TU399155 lncRNA downstream 428488 2185892 ~ 2290807 (+) False LOC117595892
XM_034298432.1 mRNA upstream 54454 1683334 ~ 1701731 (+) False spag1a
XM_034298433.1 mRNA upstream 54455 1683366 ~ 1701730 (+) True spag1a
XM_026946070.2 mRNA upstream 75833 1675040 ~ 1680352 (+) True polr2k
XM_026946045.2 mRNA upstream 126189 1610614 ~ 1629996 (+) True adck5
XM_026946046.2 mRNA upstream 147331 1596847 ~ 1608854 (+) True lix1l
XM_034298574.1 mRNA downstream 47266 1804670 ~ 1842048 (+) False grhl2b
XM_034298573.1 mRNA downstream 47267 1804671 ~ 1842048 (+) True grhl2b
XM_034298501.1 mRNA downstream 126041 1883445 ~ 1891699 (+) True psmg2
XM_034298502.1 mRNA downstream 126043 1883447 ~ 1891699 (+) False psmg2
XM_026945978.2 mRNA downstream 163531 1920935 ~ 1932700 (+) False seh1l
TU398432 other upstream 96726 1657317 ~ 1659459 (+) True G336433
TU398302 other upstream 420655 1269809 ~ 1335530 (+) False G336334
TU398322 other upstream 428678 1325816 ~ 1327507 (+) True G336350
TU398245 other upstream 620078 1132988 ~ 1136107 (+) False mllt11
TU398147 other upstream 779864 973669 ~ 976321 (+) True G336213
TU398943 other downstream 118870 1876274 ~ 1945866 (+) True G336822
TU399169 other downstream 559621 2317025 ~ 2321417 (+) False LOC113546301
TU399163 other downstream 600712 2358116 ~ 2370076 (+) False LOC113546300
XR_004577078.1 other downstream 600724 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other downstream 600724 2358128 ~ 2392472 (+) True LOC113546300

Expression Profile