RNA id: TU398253


Basic Information

Item Value
RNA id TU398253
length 316
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G336302
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 1159655 ~ 1159970 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctttcatctcagaaatattgctaaaataagaaatatattgtcactacacgatgcagaaaaattagttcatgcttttgttacctctaggttggattattgtaatgccttactgtctggatgttccagtaggagcataaacaagctccagttagtccagaatgcagcagcgagagtccttactagaaccagaagatatgaccacatcacccctatcttatccacactgcattggctcccaatcacatttcgtattgattataaaatactactattgacctataaagcactaaatggtctcgcgccacagtacctgagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU398183 lncRNA upstream 6741 1117643 ~ 1152914 (+) True G336245
TU398180 lncRNA upstream 6741 1150016 ~ 1152914 (+) False G336245
TU398182 lncRNA upstream 19895 1117643 ~ 1139760 (+) False G336245
TU398246 lncRNA upstream 23548 1132988 ~ 1136107 (+) False mllt11
TU398184 lncRNA upstream 32246 1028056 ~ 1127409 (+) True G336246
TU398269 lncRNA downstream 23598 1183568 ~ 1187725 (+) True G336313
TU398271 lncRNA downstream 24313 1184283 ~ 1187725 (+) False G336313
TU398277 lncRNA downstream 32717 1192687 ~ 1193174 (+) True G336319
TU398306 lncRNA downstream 147351 1307321 ~ 1308087 (+) True G336337
TU398321 lncRNA downstream 160845 1320815 ~ 1335907 (+) True G336349
XM_034298350.1 mRNA upstream 12568 1137077 ~ 1147087 (+) True gabpb2a
XM_034298623.1 mRNA upstream 23531 1132955 ~ 1136124 (+) True mllt11
XM_034298360.1 mRNA upstream 56576 1080994 ~ 1103079 (+) True LOC113529037
XM_034298747.1 mRNA upstream 83109 1065767 ~ 1076546 (+) True LOC113529039
XM_026918362.2 mRNA downstream 763 1160733 ~ 1169288 (+) True rab25a
XM_034298619.1 mRNA downstream 198040 1358010 ~ 1376292 (+) True fbxl20
XM_034298680.1 mRNA downstream 219683 1379653 ~ 1387764 (+) True LOC113546245
XM_034298682.1 mRNA downstream 219683 1379653 ~ 1387764 (+) False LOC113546245
XM_034298681.1 mRNA downstream 219683 1379653 ~ 1387764 (+) False LOC113546245
TU398245 other upstream 23548 1132988 ~ 1136107 (+) False mllt11
TU398147 other upstream 183334 973669 ~ 976321 (+) True G336213
TU398091 other upstream 364960 794117 ~ 794695 (+) True G336172
TU398067 other upstream 409981 739369 ~ 749674 (+) True G336161
TU397921 other upstream 872440 286849 ~ 287215 (+) True G336034
TU398302 other downstream 109839 1269809 ~ 1335530 (+) False G336334
TU398322 other downstream 165846 1325816 ~ 1327507 (+) True G336350
TU398432 other downstream 497347 1657317 ~ 1659459 (+) True G336433
TU398943 other downstream 716304 1876274 ~ 1945866 (+) True G336822
TU399169 other downstream 1157055 2317025 ~ 2321417 (+) False LOC113546301

Expression Profile