RNA id: TU398269


Basic Information

Item Value
RNA id TU398269
length 394
lncRNA type inter_gene
GC content 0.53
exon number 4
gene id G336313
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 1183568 ~ 1187725 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acGTAGCGAGGGTGaggggttgtgattaatctgattacgggGCGTAGCGAGGGTGagggggttgtgattaatctgattaccGGACGTAGCGAGGGTGAGggggttgtgattaatctgattacgggACGTAGCGAGGGTGAGggggttgtgattaatctgattacgggACGTAGCGAGGGTGAGggggttgtgattaatctgattacgggACGTAGCGAGGGTGAGggggttgtgattaatctgattacgggACGTAGCGAGGGTGAGggggttgtgattaatctgattaccGGACGTAGCGAGGGTGAGGGGGTTTGGAGCCGTGAACAGTCGACATTCCAGCGGAAACGTAGCAATCTTGTTTCCTCTCCACTCTGCGCACATTCACAAAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU398253 lncRNA upstream 23598 1159655 ~ 1159970 (+) True G336302
TU398183 lncRNA upstream 30654 1117643 ~ 1152914 (+) True G336245
TU398180 lncRNA upstream 30654 1150016 ~ 1152914 (+) False G336245
TU398182 lncRNA upstream 43808 1117643 ~ 1139760 (+) False G336245
TU398277 lncRNA downstream 4962 1192687 ~ 1193174 (+) True G336319
TU398306 lncRNA downstream 119596 1307321 ~ 1308087 (+) True G336337
TU398321 lncRNA downstream 133090 1320815 ~ 1335907 (+) True G336349
TU398303 lncRNA downstream 145095 1332820 ~ 1335574 (+) True G336334
TU398350 lncRNA downstream 169599 1357324 ~ 1357589 (+) True G336364
XM_026918362.2 mRNA upstream 14280 1160733 ~ 1169288 (+) True rab25a
XM_034298350.1 mRNA upstream 36481 1137077 ~ 1147087 (+) True gabpb2a
XM_034298623.1 mRNA upstream 47444 1132955 ~ 1136124 (+) True mllt11
XM_034298360.1 mRNA upstream 80489 1080994 ~ 1103079 (+) True LOC113529037
XM_034298747.1 mRNA upstream 107022 1065767 ~ 1076546 (+) True LOC113529039
XM_034298619.1 mRNA downstream 170285 1358010 ~ 1376292 (+) True fbxl20
XM_034298680.1 mRNA downstream 191928 1379653 ~ 1387764 (+) True LOC113546245
XM_034298682.1 mRNA downstream 191928 1379653 ~ 1387764 (+) False LOC113546245
XM_034298681.1 mRNA downstream 191928 1379653 ~ 1387764 (+) False LOC113546245
XM_026946096.2 mRNA downstream 218540 1406265 ~ 1426607 (+) True LOC113546318
TU398245 other upstream 47461 1132988 ~ 1136107 (+) False mllt11
TU398147 other upstream 207247 973669 ~ 976321 (+) True G336213
TU398091 other upstream 388873 794117 ~ 794695 (+) True G336172
TU398067 other upstream 433894 739369 ~ 749674 (+) True G336161
TU397921 other upstream 896353 286849 ~ 287215 (+) True G336034
TU398302 other downstream 82084 1269809 ~ 1335530 (+) False G336334
TU398322 other downstream 138091 1325816 ~ 1327507 (+) True G336350
TU398432 other downstream 469592 1657317 ~ 1659459 (+) True G336433
TU398943 other downstream 688549 1876274 ~ 1945866 (+) True G336822
TU399169 other downstream 1129300 2317025 ~ 2321417 (+) False LOC113546301

Expression Profile