RNA id: TU398302


Basic Information

Item Value
RNA id TU398302
length 1823
RNA type TUCP
GC content 0.48
exon number 2
gene id G336334
representative False

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 1269809 ~ 1335574 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcctGTATCCTTGGTTTACCCTGTGCTCACAGAAGCACACACCAAAGCATCTTCATTTTTATGCAAATCGATCTGCTCTGAATTTCTTCCACAGTTAGAAAGAGAGGTCTGGAGCAGCGAGGAGGATTTCCACATCTACTGAATCTGAACGTAAATAACTTTTTACTGACTGActctacgttcacactagcgagcGACGCCGCGACAGGCGATTGTTTAACGTCTAACTGCGTGTGCAACACGGAGCCGCAACTTCGGCGACTTCTGAACCGACATTTTCTCacttttatgcaaatgaggtgtGACGGCGTAAAGAAGCGACTAATCCAAACGAGCGCCTCGAACGCGTGTGCTCCGgcgtttcttcagttccacgctcacaactttagctcctacctgcaattagctCCCGCAAAAGTGGAAGAAACTTATAAACCTTGGTTACGTCTTCTCCGGTCATATACGAGCTCTCGTTAAATGTGCACAGAGACTTGAGGAAGAAAattaaagcttggaaggaagtagcagagatccaAGCCGAGCACCTAATCACACAATAAATTCGATTTTTACACTGATTAGCGTGttattttagtttgtgtttaagtCGTTAGCTTTAATATACAGCTAGTGCTACTTCTCATTGGATCTTTTAAAGGAAAGCTCTGGacaaggccacgcccacaagagactaACTACATGCACGACAGGAGAGCTTTATCAgctgctagtgtgaacgtagtgTATCTGTGGCTTGGGTTCATTTGTAAGGAAAAGCTCATGGAGGTCAGTTTGAGTGTGATTGAGCTCGTTAATACAGCCGTAACGAGGATAACGAGATGACCAAGAGACACGATGAGAGACGCtgaaatgacatgaaatgacaACATGGAAAGATGCAGCACGTGACAATGGAGACGTGTCTTTATGCCCTgttgtaatagtgtgtgtgtgtgtgtgagacagtgagtgGACTTAATGAGGAAagattaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttgttcccataaaaaaataaacaacactgaCTCATTTATAAAGTGAGATGTACGGCATTAAAAacttactgaaagtgaaaaataaggatttgaaacaaacaaactttgatttattttatatttcttcagCGCGTCACTTctactgttgaaaaaaaaaaaaaacaaaaatgatgagAAACATCTCAAAAATATACAATCGCTCTGATAAGAGGAGATTCAACACTACGAGGAGCCACATGAGGAGGCTCCACAAACTGCTTTGGCCAATCACAGCCCTCGGATTCTTTGAGCCACGCCCCCTAGAAAGTAAACTCAGACTTGCCCTTGCAGTCGGCGCCGGAAAGGGAGGCGGAGCCACTTCTCGTCACCGCCCCGTCCGACTGGACACCGTTGCTCTCCTCCCCTTGACCCGCCCCCTGGGGCGGAGCTTTAATCAGCTGGCTCAGGAGAAGCGCGAGGAGGCCCGTGGTGTCGTCTGAGGGCGGGGCTTCTGGGGGAGGGGCCTCGGGTTGAGGAGCTtcgggaggaggaggaggaggaggaggaggagccgGCGCGCTATTGGACGCCTGAATGAGAGACGAGAGGGTGTGGCTGAGCAGCTCCAGCTGCTGGGTGGAGTCAGTGTCTGGGGCggagtcagggacaggaagtgaggaggaggaagcgGAAGTGAGGAGCTGCTCAGCCATCTGAGGGAGAGTGAGACGCTCGGTCTGACCCTGCAGCAGGTTCAACAGCACAGCCATCTCCGTCTGATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU398277 lncRNA upstream 76635 1192687 ~ 1193174 (+) True G336319
TU398269 lncRNA upstream 82084 1183568 ~ 1187725 (+) True G336313
TU398271 lncRNA upstream 82084 1184283 ~ 1187725 (+) False G336313
TU398253 lncRNA upstream 109839 1159655 ~ 1159970 (+) True G336302
TU398183 lncRNA upstream 116895 1117643 ~ 1152914 (+) True G336245
TU398350 lncRNA downstream 21794 1357324 ~ 1357589 (+) True G336364
XR_004577008.1 lncRNA downstream 158785 1494315 ~ 1499021 (+) True LOC117595828
TU398232 lncRNA downstream 213135 1548665 ~ 1548892 (+) True G336283
TU398386 lncRNA downstream 213461 1548991 ~ 1549230 (+) True G336391
TU398216 lncRNA downstream 214325 1549855 ~ 1551200 (+) True G336267
XM_026918362.2 mRNA upstream 100521 1160733 ~ 1169288 (+) True rab25a
XM_034298350.1 mRNA upstream 122722 1137077 ~ 1147087 (+) True gabpb2a
XM_034298623.1 mRNA upstream 133685 1132955 ~ 1136124 (+) True mllt11
XM_034298360.1 mRNA upstream 166730 1080994 ~ 1103079 (+) True LOC113529037
XM_034298747.1 mRNA upstream 193263 1065767 ~ 1076546 (+) True LOC113529039
XM_034298619.1 mRNA downstream 22480 1358010 ~ 1376292 (+) True fbxl20
XM_034298680.1 mRNA downstream 44123 1379653 ~ 1387764 (+) True LOC113546245
XM_034298682.1 mRNA downstream 44123 1379653 ~ 1387764 (+) False LOC113546245
XM_034298681.1 mRNA downstream 44123 1379653 ~ 1387764 (+) False LOC113546245
XM_026946096.2 mRNA downstream 70735 1406265 ~ 1426607 (+) True LOC113546318
TU398245 other upstream 133702 1132988 ~ 1136107 (+) False mllt11
TU398147 other upstream 293488 973669 ~ 976321 (+) True G336213
TU398091 other upstream 475114 794117 ~ 794695 (+) True G336172
TU398067 other upstream 520135 739369 ~ 749674 (+) True G336161
TU397921 other upstream 982594 286849 ~ 287215 (+) True G336034
TU398432 other downstream 321787 1657317 ~ 1659459 (+) True G336433
TU398943 other downstream 540744 1876274 ~ 1945866 (+) True G336822
TU399169 other downstream 981495 2317025 ~ 2321417 (+) False LOC113546301
TU399163 other downstream 1022586 2358116 ~ 2370076 (+) False LOC113546300
XR_004577078.1 other downstream 1022598 2358128 ~ 2392478 (+) False LOC113546300

Expression Profile