RNA id: TU398446


Basic Information

Item Value
RNA id TU398446
length 358
lncRNA type sense_over
GC content 0.47
exon number 4
gene id polr2k
representative False

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 1675040 ~ 1680352 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGCGCATGCGCAGAACGTTCTGGTTCagcagtgcgcatgcgcaaatAACAGCGCGGACCTAACGCACGTTTGTTGGTGAAATGGATTCCCAGAAGGACATGCAGCCTCCTAAACAGCAGCCCATGATCTACATCTGTGGAGAGTGTCACACAGAAAATGAGATCAAGGCCAGAGACCCGATCCGCTGCAGAGAGTGCGGCTACAGAATCATGTACAAGAAGAGGACGAAGAGACTGGTCGTGTTCGACGCCCGATGAACTCCAACCCAACAGATTTTCCTGCTCCGAGCTGAAAccctttagtttttttttgttttttttctccattttagtTTGAAATTGTAAATAAGTGTTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU398224 lncRNA upstream 86763 1586247 ~ 1588294 (+) True G336275
TU398401 lncRNA upstream 94757 1579795 ~ 1580300 (+) True G336406
TU398216 lncRNA upstream 123857 1549855 ~ 1551200 (+) True G336267
TU398386 lncRNA upstream 125827 1548991 ~ 1549230 (+) True G336391
TU398232 lncRNA upstream 126165 1548665 ~ 1548892 (+) True G336283
TU398200 lncRNA downstream 57867 1738163 ~ 1741007 (+) False G336256
TU398201 lncRNA downstream 57867 1738163 ~ 1741007 (+) True G336256
TU398210 lncRNA downstream 75889 1756185 ~ 1757404 (+) True G336261
TU398493 lncRNA downstream 140836 1821132 ~ 1842536 (+) True G336481
TU398494 lncRNA downstream 162293 1842589 ~ 1842970 (+) True G336482
XM_026946045.2 mRNA upstream 45061 1610614 ~ 1629996 (+) True adck5
XM_026946046.2 mRNA upstream 66203 1596847 ~ 1608854 (+) True lix1l
XM_034298552.1 mRNA upstream 88595 1578998 ~ 1586462 (+) True prcc
XM_034298554.1 mRNA upstream 96901 1574337 ~ 1578156 (+) True mrpl24
XM_034298424.1 mRNA upstream 130526 1530514 ~ 1544531 (+) True mindy1
XM_034298432.1 mRNA downstream 3038 1683334 ~ 1701731 (+) False spag1a
XM_034298433.1 mRNA downstream 3070 1683366 ~ 1701730 (+) True spag1a
XM_034298574.1 mRNA downstream 124374 1804670 ~ 1842048 (+) False grhl2b
XM_034298573.1 mRNA downstream 124375 1804671 ~ 1842048 (+) True grhl2b
XM_034298501.1 mRNA downstream 203149 1883445 ~ 1891699 (+) True psmg2
TU398432 other upstream 15598 1657317 ~ 1659459 (+) True G336433
TU398302 other upstream 339527 1269809 ~ 1335530 (+) False G336334
TU398322 other upstream 347550 1325816 ~ 1327507 (+) True G336350
TU398245 other upstream 538950 1132988 ~ 1136107 (+) False mllt11
TU398147 other upstream 698736 973669 ~ 976321 (+) True G336213
TU398943 other downstream 195978 1876274 ~ 1945866 (+) True G336822
TU399169 other downstream 636729 2317025 ~ 2321417 (+) False LOC113546301
TU399163 other downstream 677820 2358116 ~ 2370076 (+) False LOC113546300
XR_004577078.1 other downstream 677832 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other downstream 677832 2358128 ~ 2392472 (+) True LOC113546300

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU521059 True 354 lncRNA 0.39 4 CI01000320 238832 ~ 240181 (+)
striped catfish (Pangasianodon hypophthalmus) TU267276 False 215 lncRNA 0.35 1 NC_047608.1 13941004 ~ 13941218 (-)
tiger barb (Puntius tetrazona) TU267276 True 3194 lncRNA 0.44 3 NW_025047944.1 1220615 ~ 1224483 (+)
mexican tetra (Astyanax mexicanus) TU267276 False 370 lncRNA 0.42 5 NC_035919.1 11551704 ~ 11554569 (+)