Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU398493 |
| length | 543 |
| lncRNA type | sense_over |
| GC content | 0.31 |
| exon number | 2 |
| gene id | G336481 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047617.1 |
| NCBI id | CM018563.1 |
| chromosome length | 20335669 |
| location | 1821132 ~ 1842536 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | description |
|---|---|
| ko05110 | Vibrio cholerae infection |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU398210 | lncRNA | upstream | 63728 | 1756185 ~ 1757404 (+) | True | G336261 |
| TU398200 | lncRNA | upstream | 80125 | 1738163 ~ 1741007 (+) | False | G336256 |
| TU398201 | lncRNA | upstream | 80125 | 1738163 ~ 1741007 (+) | True | G336256 |
| TU398446 | lncRNA | upstream | 140836 | 1675057 ~ 1680296 (+) | False | polr2k |
| TU398224 | lncRNA | upstream | 232838 | 1586247 ~ 1588294 (+) | True | G336275 |
| TU398494 | lncRNA | downstream | 53 | 1842589 ~ 1842970 (+) | True | G336482 |
| TU398980 | lncRNA | downstream | 123440 | 1965976 ~ 1984496 (+) | False | G336849 |
| TU398979 | lncRNA | downstream | 139893 | 1982429 ~ 1984496 (+) | True | G336849 |
| TU399155 | lncRNA | downstream | 343356 | 2185892 ~ 2290807 (+) | False | LOC117595892 |
| TU399154 | lncRNA | downstream | 344037 | 2186573 ~ 2288884 (+) | False | LOC117595892 |
| XM_034298432.1 | mRNA | upstream | 119401 | 1683334 ~ 1701731 (+) | False | spag1a |
| XM_034298433.1 | mRNA | upstream | 119402 | 1683366 ~ 1701730 (+) | True | spag1a |
| XM_026946070.2 | mRNA | upstream | 140780 | 1675040 ~ 1680352 (+) | True | polr2k |
| XM_026946045.2 | mRNA | upstream | 191136 | 1610614 ~ 1629996 (+) | True | adck5 |
| XM_026946046.2 | mRNA | upstream | 212278 | 1596847 ~ 1608854 (+) | True | lix1l |
| XM_034298501.1 | mRNA | downstream | 40909 | 1883445 ~ 1891699 (+) | True | psmg2 |
| XM_034298502.1 | mRNA | downstream | 40911 | 1883447 ~ 1891699 (+) | False | psmg2 |
| XM_026945978.2 | mRNA | downstream | 78399 | 1920935 ~ 1932700 (+) | False | seh1l |
| XM_026945979.2 | mRNA | downstream | 78400 | 1920936 ~ 1927272 (+) | True | seh1l |
| XM_034298499.1 | mRNA | downstream | 78400 | 1920936 ~ 1927272 (+) | False | seh1l |
| TU398432 | other | upstream | 161673 | 1657317 ~ 1659459 (+) | True | G336433 |
| TU398302 | other | upstream | 485602 | 1269809 ~ 1335530 (+) | False | G336334 |
| TU398322 | other | upstream | 493625 | 1325816 ~ 1327507 (+) | True | G336350 |
| TU398245 | other | upstream | 685025 | 1132988 ~ 1136107 (+) | False | mllt11 |
| TU398147 | other | upstream | 844811 | 973669 ~ 976321 (+) | True | G336213 |
| TU398943 | other | downstream | 33738 | 1876274 ~ 1945866 (+) | True | G336822 |
| TU399169 | other | downstream | 474489 | 2317025 ~ 2321417 (+) | False | LOC113546301 |
| TU399163 | other | downstream | 515580 | 2358116 ~ 2370076 (+) | False | LOC113546300 |
| XR_004577078.1 | other | downstream | 515592 | 2358128 ~ 2392478 (+) | False | LOC113546300 |
| XR_004577077.1 | other | downstream | 515592 | 2358128 ~ 2392472 (+) | True | LOC113546300 |
