RNA id: TU398943


Basic Information

Item Value
RNA id TU398943
length 3279
RNA type TUCP
GC content 0.40
exon number 2
gene id G336822
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 1876274 ~ 1945866 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ataataataataataataataataataataataataaaaaagtcaaataaataaatggcaagCGCTggcattaataatgataatttctCTGGAAGTTATAAAAGCAGCAGCGAGTTTTGTCCTGTATGCGACCGCCTCATAATCATCACATAGCAgatataggaaaaaaatataagaaGTACTTTTTGTAACTTATGTTTTGactatactgtagtattattttattatctcttttttgttttttttttctttgttttgttttttacaaaagacaaaaagcaCAATTGCAGGGCATTCACAAAAAACCTGATGCCGCCGTGTTAAATTTCTCATCGTAATATCTtctatacattatattacagtattaaCATTTGTTCTCTTGTGGTTTTTTTCATCTACCCATTGGGTAGGATATGTGCATAATATTTtcaagttatatatttatacagcacaGTACGAATAAACAAAGTCGGACTTGTGAAAAAAGCACCGTAGGAAGTGAGGCACAACGAAGGTGGGGAGGGATCTTTTTtttgggtgggtgggtggaggGGTGTTTGGTTGGGTTGGGAGGTGTTTGGGGTTTGGAGTGCAAAGTGAAAAGGTTCCTATTTCTGCTTTACCACAATTTTTAGGCACCAAATCTGCTCAGAGAAACATGCAACAAAcgtcaaaatataaaatataatcaacACTCGGAGGTTTTAAACAGTGGATGCAACGGTAATACACgtgagaagaaagaaatgaagattaaacatgtaaaaatgaagTACACGTGAACATGAGACAATAGAGAGCAGCATTAGCATTTGCATTAGCAATAacgttagcattagcatagcAGCAGCaggacctcacacacacacacacacacacacacacacaaacagcgaGGATGAGTAACAGCAAGTGAGAGCTGATGGAATCGCACTGAGCGTAGTACGGCAGCTGTCTTGCGATTTTCGACACACGCCCATTTTCACTTCCACTTAGTCGAAACGCCATCTTAAGTGCTGAATCAACTCAACTCAACCAATTTCAAACTCTCACTGACTTGatgccattaaaaataaaaacggtGTTAGGATGACgctgtttaatttttcatttattagctATTTTTCCCCAGATTATTTGTTGCAGGCTCGGTAGCAATCCTAGCAACTGgctttaattacaaaatatagTAGTTAGCCAAACATTAGCTATCTTGTTAGCAAACTTAGGTGACTACTAAAATGAGAGGTAACATCTACGCTGGCTAGTAAGCTAGTTAGCCTTAAAGCAGTGCTGTAattagcttagctaatgttgcGAAACTACTACAGTGTTTGATTACAAACAGCATTTTAGACTAAGCATGCTTTCAAGTTGAACAAATTAAGAAAAAGCCTagtggtgatgtcacatgacCCGGTTTGTAACTGTTGCTTTTTCGGCTAACTGATTAACAAGCCTTCTGATCAGCATGTTaggatgctagctagctagctagcatgctgATCTGACTCTCTACAGAGTATTCCTGTACATGTTCCTGTCAGTGAACGAGAGTgctttaaaaactttattgGAACAATTTAAGGTTAGCGGAACGTTTTCAGAACCTTACTTTTGGTTCCCAGAAGGTTCAATCTGATGTTTTTGCGTTCTTACGCAGCATTTCTGCAACATTTTTAGTTGTATAAATAGAAGCTAACATTCCCgtgatgtttgtttttgtatcaCTAGACATGACACTTTTTTAGAACTTCACaggaatgttatttttgtaaCTTTACAGTCTAAACttcttaaaatgttttagttCATTACTTAACATCATGCTAACACTTGACCCAAGACAAGATGGCCGACGTTTAAGCGTAACAAAGTTTGCCATCAAAGGAATATTTCATAACTAACGAATTTGGCTTTTTTATGAGCCTTTGTAAATCTAAGCGCCAGCGGTTCTCGGTTCTCAAGGCAGTTctaagaaaacaagaaagaagctAGCCAATGAGAGCGTGCTCGACATTGTGGATGTGCATAAGACTACGTTTCCCATGATTCCCTTGCATTTGGACCATGCTGAAGCGAGCAAGTTTTAAAGTGCTATTTtgaaaggatgaaaaatgacacttgatgagaaaaatgaacagaatttAAACAacacccccttttttttaagtgcCATCTTGTGGGTTAATAGTGGATCTTTTTAGGCTGGATCAGAAGTCCCTAGTTTTAAGAAACAAAAGTGAAATGGATACTAAAATATGCTTAAAAATTAGAATATGGACcaaaaaaatactaaaagttAGTGCAATGTAGATTTTTTCTCTGCATTCTGATGATATCACTGAGATTTAAGGAACAATTCGACGAATCATGGCACTCAAATTTGGATTTCGATTGGTTAAGAActtaagggtttttttgtgcatgaatgttaaaaaacttcaaacaaattaaaaaaaaaaaaatcctgtatcCTGTGCAGTTTCTTGAGcgatctgcaaaaaaaaaaagttgattatCTTAAACAAAAGAAAGCGTACAAAAAACAGGAACAGAAAGTTGCCGACAAGCCTGAACATCCACACGAGGCCCACAAGTTTtagcaaaataattaaaatgaaaaaaaagtatacaaaaGTGATATTCACTTAAGCTTGGTTCCTCGATTTTCTGGATTACTAAATTGTGCAAGGGAATGAGTGCTTGGAGGGAAGCCACACCCCCTTTCGCATATTTATGAACAGGGTCCAAAGAGCACAGCCCCTCCCactctgtgcttgtcagtcaAGTCGGTTTGTCGCGTCTTCCATCCTTCGCCTTCCTCTGATTGGACGGCGGTGCGTTATTGCTGTGCTGGTGCAAgaaacaggaggaggaggaggaggaggaggtgaagtTTGGGTAAGATCGACCAATCACATCGCTGTAAGTGGGCGGTGGTCCTTGCCCCTGAAGGCGCGAGTACGAGGCACTCTTGCCCGAGTGTGTGCTGGGCGGCCTGGGCCCGTAAACGTCCATGATGTCGCTATCAAATACAGTGCGATTGGGCGGAGCTCGCACAGAAGCGCGGCTCAGTTCGAGTTGCTGCTCGGGGCTTCTCAGGGCAAGAGTGCAGGGGCCTTTATACGGCGGCGGCTCCTCACCGTCTGACAGGCAGATGGTGGGTGGGAGCTCAATTTGCGTCTGCATTTGTGGGTAGGTGGGCTGGAAACGGCTCGACTGCTCCCTCTGGATAAACGAAGGAGGTACGAAACGATCGAAACTCCGTGGCCCGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU398494 lncRNA upstream 33304 1842589 ~ 1842970 (+) True G336482
TU398493 lncRNA upstream 33738 1821132 ~ 1842536 (+) True G336481
TU398210 lncRNA upstream 118870 1756185 ~ 1757404 (+) True G336261
TU398200 lncRNA upstream 135267 1738163 ~ 1741007 (+) False G336256
TU398201 lncRNA upstream 135267 1738163 ~ 1741007 (+) True G336256
TU398980 lncRNA downstream 20110 1965976 ~ 1984496 (+) False G336849
TU398979 lncRNA downstream 36563 1982429 ~ 1984496 (+) True G336849
TU399155 lncRNA downstream 240026 2185892 ~ 2290807 (+) False LOC117595892
TU399154 lncRNA downstream 240707 2186573 ~ 2288884 (+) False LOC117595892
XR_004577080.1 lncRNA downstream 255914 2201780 ~ 2203741 (+) True LOC117595895
XM_034298574.1 mRNA upstream 34226 1804670 ~ 1842048 (+) False grhl2b
XM_034298573.1 mRNA upstream 34226 1804671 ~ 1842048 (+) True grhl2b
XM_034298432.1 mRNA upstream 174543 1683334 ~ 1701731 (+) False spag1a
XM_034298433.1 mRNA upstream 174544 1683366 ~ 1701730 (+) True spag1a
XM_026946070.2 mRNA upstream 195922 1675040 ~ 1680352 (+) True polr2k
XM_034298840.1 mRNA downstream 45948 1991814 ~ 2003334 (+) True rnmt
XM_026946066.2 mRNA downstream 80541 2026407 ~ 2039047 (+) True mc5ra
XM_026946068.2 mRNA downstream 113466 2059332 ~ 2065910 (+) True cthrc1a
XM_034298463.1 mRNA downstream 129017 2074883 ~ 2143022 (+) True rims2b
XM_026945946.2 mRNA downstream 210689 2156555 ~ 2163523 (+) True LOC113546187
TU398432 other upstream 216815 1657317 ~ 1659459 (+) True G336433
TU398302 other upstream 540744 1269809 ~ 1335530 (+) False G336334
TU398322 other upstream 548767 1325816 ~ 1327507 (+) True G336350
TU398245 other upstream 740167 1132988 ~ 1136107 (+) False mllt11
TU398147 other upstream 899953 973669 ~ 976321 (+) True G336213
TU399169 other downstream 371159 2317025 ~ 2321417 (+) False LOC113546301
TU399163 other downstream 412250 2358116 ~ 2370076 (+) False LOC113546300
XR_004577078.1 other downstream 412262 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other downstream 412262 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other downstream 412262 2358128 ~ 2392375 (+) False LOC113546300

Expression Profile