RNA id: TU398979


Basic Information

Item Value
RNA id TU398979
length 2012
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G336849
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 1965976 ~ 1984496 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttgaattttattttatttgttcactTCATGACAGTCAAAATGGAGGACGCAACCATAGCAACGATGCGGATTTTCCGCCATCttccacacacaccatgaaaataaatcaactctGAGAGCTGAAGTTTAAATATCAGACACAAAACTGTAACAGATGAGGTAAAAGCTGAGCCTTCGGTTTTACACacaggaaaaaacaagaaaaaacaagaggTTCTCttataaatatcagaaaatccTGATGATTGCATTGATCCTAATCGAGGTGTTTAATCAGATTTAATCGGATTAAACCATCTCTGCGTTGCTGAAGCTGCGGTCTGTAACATTTACATCACATGTAACATTCATAGAAATTGatgcagctttttatttttaaatatttccaacaaaatacaaaaagtgGTGATTCAACACATCTCgcaagtttctttcttttcagccCAGAAATGAGCCCCGCCCCCAGTTCATACAGAGCTACCTGGCTCCGCCCACTTTCCTTAAAAGGAATACATATACAGACATAGTTTCAGTCAAGAGAGAAAcggagagagacacacagacacacactgagagatgaacagagagagagagagagatacggagagagagggatacacagacacactgagagatggagaaaaacagagagatacagctagagagagatatatacacacactgagagacagagagagagagagaaagatacacagagagagagcgagagagatagatacagagaaagagatacagagagcaagagagagtatgagagagaccggaagagagagggagagatagagagcaagatagagagagagacacagagcgagagggagagagagagagagagagggagggagcgagagagagagcgaaagaaagcgagagtgagagagcaagatagagagagaacaagagagatacacagagagagatagcgagagtaagacagagagagcaaaagagacacagagagagagatagagagagcaagagagacagagagagagatacagagagatacaaagagagatattaattaacattaagaCACTAATTTCTGTATGTTGTATTGTAACACGAGTTAGCGTATATAACAACAGATTAACGCAAGCTCGCTACGTTTATCGGTTTCCAGCTTTTTATGTCAAACTGATTTCATGCTGTATATGAATAAGGACACGTGATACGAAGCGGTAGATGTGTTGATTTTTCGGCTAATGAACAGTAACTATAGCATCCATGAGACACGTCAATACCGCCGCCATCTTGGAAGGGCTCAATTTAAGCGGACTTTTCCCAAAATGCCCTCCCAGTATGGAGGAAGATTTGCAGTTAGATTTGTTATATTAGCGGCTAGCGATATCGTGCTAGCGATGTTGCAGCCCCGCCCTCATACAAACCtatggagagaaaaacaaaaaggaagttTGAGACGGATCCAAATTGTCAccataatgtttctttttttggtatGAATGGACGAttgaacaggaagtgatgtcagtAGTGCACATCTCACAGGAAAacctttattaatttatgtttatagCTCATTATTTACGTAGGCGATGATGTCATCCGTTGGGTTTTTTATTCGTTTTTCTTTCGGAAGCCCACTTTGTCTTTGGTCTCCTGGAGTTTTTCTGTGAACTTGTCCTTGGTTTCTTCGATCCTCTCAGAGAAGCGGTCTCTCGTCTCCTCCATCTTCTCCTGCAGGTACTCTTTAACCGGCGGCGGCGTCGACATGTAGCCGTGTTTACGCAGGTACTTCACCGAGAGAGACGTCCCGCCCAACGTCAGCGTGTAGCGCGCCGGAGTGGCgatctgcaacacacacacacacacgtcgtGTAGAAATCATCGTCATAAAACTCTTTCACCGATCGGTCAGAAATACGGCAATGAAGAAGTTAAACCTTTAGCAAATGAGCGAGTGTcgaaatcataaaaatcatcTGAGAACGGAGAACACGgggagaacacagagaaaatgGGGAgaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU398494 lncRNA upstream 139459 1842589 ~ 1842970 (+) True G336482
TU398493 lncRNA upstream 139893 1821132 ~ 1842536 (+) True G336481
TU398210 lncRNA upstream 225025 1756185 ~ 1757404 (+) True G336261
TU398200 lncRNA upstream 241422 1738163 ~ 1741007 (+) False G336256
TU399155 lncRNA downstream 201396 2185892 ~ 2290807 (+) False LOC117595892
TU399154 lncRNA downstream 202077 2186573 ~ 2288884 (+) False LOC117595892
XR_004577080.1 lncRNA downstream 217284 2201780 ~ 2203741 (+) True LOC117595895
XR_004577082.1 lncRNA downstream 257689 2242185 ~ 2259536 (+) False LOC117595896
TU399175 lncRNA downstream 258997 2243493 ~ 2244230 (+) True G336991
XM_026945978.2 mRNA upstream 49729 1920935 ~ 1932700 (+) False seh1l
XM_026945979.2 mRNA upstream 55157 1920936 ~ 1927272 (+) True seh1l
XM_034298499.1 mRNA upstream 55157 1920936 ~ 1927272 (+) False seh1l
XM_034298501.1 mRNA upstream 90730 1883445 ~ 1891699 (+) True psmg2
XM_034298502.1 mRNA upstream 90730 1883447 ~ 1891699 (+) False psmg2
XM_034298840.1 mRNA downstream 7318 1991814 ~ 2003334 (+) True rnmt
XM_026946066.2 mRNA downstream 41911 2026407 ~ 2039047 (+) True mc5ra
XM_026946068.2 mRNA downstream 74836 2059332 ~ 2065910 (+) True cthrc1a
XM_034298463.1 mRNA downstream 90387 2074883 ~ 2143022 (+) True rims2b
XM_026945946.2 mRNA downstream 172059 2156555 ~ 2163523 (+) True LOC113546187
TU398943 other upstream 36563 1876274 ~ 1945866 (+) True G336822
TU398432 other upstream 322970 1657317 ~ 1659459 (+) True G336433
TU398302 other upstream 646899 1269809 ~ 1335530 (+) False G336334
TU398322 other upstream 654922 1325816 ~ 1327507 (+) True G336350
TU398245 other upstream 846322 1132988 ~ 1136107 (+) False mllt11
TU399169 other downstream 332529 2317025 ~ 2321417 (+) False LOC113546301
TU399163 other downstream 373620 2358116 ~ 2370076 (+) False LOC113546300
XR_004577078.1 other downstream 373632 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other downstream 373632 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other downstream 373632 2358128 ~ 2392375 (+) False LOC113546300

Expression Profile