RNA id: TU399175


Basic Information

Item Value
RNA id TU399175
length 543
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G336991
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 2243493 ~ 2244230 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTGGCTTGTGGAGTTCACACTCTCTTGCTGCTGCCATTTGCCATTGCAACTAGACTCCCGTCATACAGGGTGACTGCTAGAACAATGTGTTCCACTCTTCATGAAGGACACAGGTGACTGCGTGGCATTTGAAGGACTTGTGGCCTCCTATTGAGTTGCTGGGCTGCAGACACTCTGCACTGGAGTGCCCCATTTTATCTTCCTGGGTTATTGTGCTGCGGGGAGTATTGAACACTCTTGCAAAGTTCTCTGTACAAGGCCGGATCTGCACCTCACTACTGCTCCTTTCAGTTGGGGGCTGCACTGAGGGGACACTATTTTGGTGTGTACTGGTAACATGCAACACGGTGTGGTATTTTGTAGTGGTAATTACTGaccttgtgtgtgcagtgtttgctATGTTGCATGCTTGTATGGTGTTGGGTttgttgtgtctgtctctctcaccaggGCCTCCTAGGAGAGGAGCTGTGGGTGCCGTGCCGACCCGACCTTATTAGTTTGAGAAGCTCCAGCCAGTTTCCCTTCGTCTCTTTTTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577080.1 lncRNA upstream 39752 2201780 ~ 2203741 (+) True LOC117595895
TU398980 lncRNA upstream 258997 1965976 ~ 1984496 (+) False G336849
TU398979 lncRNA upstream 258997 1982429 ~ 1984496 (+) True G336849
TU398494 lncRNA upstream 400523 1842589 ~ 1842970 (+) True G336482
TU398493 lncRNA upstream 400957 1821132 ~ 1842536 (+) True G336481
XR_004577081.1 lncRNA downstream 1710 2245940 ~ 2259536 (+) True LOC117595896
TU399149 lncRNA downstream 20290 2264520 ~ 2288884 (+) False LOC117595892
TU399240 lncRNA downstream 152873 2397103 ~ 2397302 (+) True G337052
TU399249 lncRNA downstream 206289 2450519 ~ 2551280 (+) True G337059
TU399260 lncRNA downstream 263330 2507560 ~ 2511667 (+) True G337066
XM_034298849.1 mRNA upstream 3070 2209792 ~ 2240423 (+) True LOC113546299
XM_026945946.2 mRNA upstream 79970 2156555 ~ 2163523 (+) True LOC113546187
XM_034298463.1 mRNA upstream 100471 2074883 ~ 2143022 (+) True rims2b
XM_026946068.2 mRNA upstream 177583 2059332 ~ 2065910 (+) True cthrc1a
XM_026946066.2 mRNA upstream 204446 2026407 ~ 2039047 (+) True mc5ra
XM_034298843.1 mRNA downstream 16026 2260256 ~ 2351749 (+) True LOC117595892
XM_034298846.1 mRNA downstream 57915 2302145 ~ 2340261 (+) True LOC113546301
XM_034298847.1 mRNA downstream 113898 2358128 ~ 2392537 (+) False LOC113546300
XM_034298848.1 mRNA downstream 113898 2358128 ~ 2388198 (+) False LOC113546300
XM_034298643.1 mRNA downstream 203986 2448216 ~ 2453296 (+) True LOC117595862
TU398943 other upstream 297627 1876274 ~ 1945866 (+) True G336822
TU398432 other upstream 584034 1657317 ~ 1659459 (+) True G336433
TU398302 other upstream 907963 1269809 ~ 1335530 (+) False G336334
TU398322 other upstream 915986 1325816 ~ 1327507 (+) True G336350
TU398245 other upstream 1107386 1132988 ~ 1136107 (+) False mllt11
TU399169 other downstream 72795 2317025 ~ 2321417 (+) False LOC113546301
TU399163 other downstream 113886 2358116 ~ 2370076 (+) False LOC113546300
XR_004577078.1 other downstream 113898 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other downstream 113898 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other downstream 113898 2358128 ~ 2392375 (+) False LOC113546300

Expression Profile