RNA id: TU399352


Basic Information

Item Value
RNA id TU399352
length 1100
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G337128
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 2841356 ~ 2842455 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGATAAATGTATTTCACTAAAAtgatttggaaatgtttttatttaggttacTTTTCTAAATAACCTTCGCTTGACGACGAAAGATAACGTTGTATAAGGAGCCGGTTTAACAAACGCATCTAGCGCGCCCAAGAAAAGTGTTTGCTCTGTTACTGGGAGATCGAAGTGTCAAATCCTGTAGATGCCACAGGTGAGAGGGAGGacattactctctctcccctgtcaatcacagcgataCTAGCCAATCGTAGGCATCTGTAaggtcatgtatgcagaagagggcagataggtctttcctccgagtgtgttacgctgccctgtggaACAGTATAAGCAGCGGTTTGAAAAGAtatggttggctggcttcacaagGAAACACGTGTTCGACTTCACACTCCTTGGTTCATAGCTGTATGATAGAGGAGAACTGACTGGTGGgcgggaattggcaggtgaccaaattgggagaaagTAAGGGGGAAAAACAGTGTTAAATGCAGTCCGTCTGTCTAAAACCACACTAGCTAAGTGTGACTTCCCCACACAGTGAAGATCACGCTTTggtcaagttgttggatagctacatgTCATAGCGAGGCTgacagttcagtttgtaatcagatactggctgttaaaaatgaaagaaatcttTGCTACAGATGCTGCAGCTTTATTCTGTTTGAgaaacatgcaaaagagaaacacatttcagagCTGTGTcatcatgtgaagggttttcccaggccaccacacatatacCATTCCCTTTCATTACAAGCCTTGAGAATAGTTTGACATAAAGTCTTTGTTTCCGTATTTTGCCTACTTTTacttataaaaaattataatgtcaTAACAATGCACATAGTCacactatttatatttttactaaaCTCTGAAACTCTGATGGAAATTGGaaaccttctttttttctctgttttctttctctgtggttgattactgaaaaaaaaaaagaaagtgccCTTTAAAAATGTCCACATGGAAAGCGTAAATGCTTCTGGGCTTTGGCTGAGGGATGTTCTGAaggagttgatttttttttttttgccaaaataacATGCCCTGaattctttttaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU399351 lncRNA upstream 6800 2834271 ~ 2834556 (+) True G337127
TU399350 lncRNA upstream 7297 2833588 ~ 2834059 (+) True G337126
TU399343 lncRNA upstream 19826 2821090 ~ 2821530 (+) True G337119
TU399341 lncRNA upstream 36610 2804508 ~ 2804746 (+) True G337117
TU399337 lncRNA upstream 44008 2797103 ~ 2797348 (+) True G337113
TU399353 lncRNA downstream 209 2842664 ~ 2842875 (+) True G337129
TU399360 lncRNA downstream 20072 2862527 ~ 2862968 (+) True G337136
TU399362 lncRNA downstream 28228 2870683 ~ 2870909 (+) True G337138
XR_003404701.2 lncRNA downstream 84069 2926524 ~ 2995271 (+) True LOC113546290
TU399423 lncRNA downstream 176655 3019110 ~ 3019410 (+) True G337194
XM_026946022.2 mRNA upstream 99762 2671258 ~ 2741594 (+) True wnk4b
XM_034298396.1 mRNA upstream 181078 2607346 ~ 2660278 (+) False arhgap27l
XM_026946102.2 mRNA downstream 2952 2845407 ~ 2890143 (+) True tanc2a
XM_034298751.1 mRNA downstream 152822 2995277 ~ 3023586 (+) True hdac5
XM_034298756.1 mRNA downstream 189193 3031648 ~ 3039255 (+) True lsm12a
XM_034298407.1 mRNA downstream 198913 3041368 ~ 3067972 (+) True vwa3a
XM_034298408.1 mRNA downstream 198913 3041368 ~ 3067972 (+) False vwa3a
XR_004577078.1 other upstream 448878 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 448884 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 448981 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 471280 2358116 ~ 2370076 (+) False LOC113546300
TU399169 other upstream 519939 2317025 ~ 2321417 (+) False LOC113546301
TU400576 other downstream 1510067 4352522 ~ 4355029 (+) True G338163
TU401842 other downstream 3497052 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 3762202 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 3868560 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 5440505 8282960 ~ 8285204 (+) True G340208

Expression Profile