RNA id: TU399353


Basic Information

Item Value
RNA id TU399353
length 212
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G337129
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 2842664 ~ 2842875 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAAGATGCTTCCTGACCAGCAGTTTGCTCCCCTGTTGGCTCCGCAGGTACGTTTTGGGATTGCTGCGTTAGTTACAGGAAGCCAGTAGAAGTGAAGTGACATGAGATTTTATCAATTTCTCATGAATCATTTGACACTACTCTCATcatcatattttcatttctttagttTGTAGTTAGTTTTGCTGAAGTGCTAAAGGACCTTGGTCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU399352 lncRNA upstream 209 2841356 ~ 2842455 (+) True G337128
TU399351 lncRNA upstream 8108 2834271 ~ 2834556 (+) True G337127
TU399350 lncRNA upstream 8605 2833588 ~ 2834059 (+) True G337126
TU399343 lncRNA upstream 21134 2821090 ~ 2821530 (+) True G337119
TU399341 lncRNA upstream 37918 2804508 ~ 2804746 (+) True G337117
TU399360 lncRNA downstream 19652 2862527 ~ 2862968 (+) True G337136
TU399362 lncRNA downstream 27808 2870683 ~ 2870909 (+) True G337138
XR_003404701.2 lncRNA downstream 83649 2926524 ~ 2995271 (+) True LOC113546290
TU399423 lncRNA downstream 176235 3019110 ~ 3019410 (+) True G337194
TU399424 lncRNA downstream 190969 3033844 ~ 3034394 (+) True G337195
XM_026946022.2 mRNA upstream 101070 2671258 ~ 2741594 (+) True wnk4b
XM_034298396.1 mRNA upstream 182386 2607346 ~ 2660278 (+) False arhgap27l
XM_026946102.2 mRNA downstream 2532 2845407 ~ 2890143 (+) True tanc2a
XM_034298751.1 mRNA downstream 152402 2995277 ~ 3023586 (+) True hdac5
XM_034298756.1 mRNA downstream 188773 3031648 ~ 3039255 (+) True lsm12a
XM_034298407.1 mRNA downstream 198493 3041368 ~ 3067972 (+) True vwa3a
XM_034298408.1 mRNA downstream 198493 3041368 ~ 3067972 (+) False vwa3a
XR_004577078.1 other upstream 450186 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 450192 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 450289 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 472588 2358116 ~ 2370076 (+) False LOC113546300
TU399169 other upstream 521247 2317025 ~ 2321417 (+) False LOC113546301
TU400576 other downstream 1509647 4352522 ~ 4355029 (+) True G338163
TU401842 other downstream 3496632 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 3761782 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 3868140 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 5440085 8282960 ~ 8285204 (+) True G340208

Expression Profile