RNA id: TU399433


Basic Information

Item Value
RNA id TU399433
length 2683
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G337197
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 3095997 ~ 3102191 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTTTAATCGGCCATTTTAAGCCCTAATCGAGCGTTAGCCACTGTTCATGCCATCGTTACGATTCCCCACATGCCCTAACTCTTTAAAAAGGCATTTCTATAGCGTTCAGCTACAAAGGCTACAAAGTTCAGCACCATTGTACAGGTTATGCATATTCGATTTTATAAGCATTTTATCAATGATGGTAATAAATGTCACAAACATTTTAAGTACAATACAGACAGATTgagtaagaaaataaaaatggatggAAATTATCAGGAATGGACgtttgtaaatgtatatatgtgtgtgtgtgtgtgcttgtttacATTCAATTCAAGCGAAAcgttttgtatttaattttttttcccccatgcttAAAGGAAGTTAGCATTCTGCATCAAAGCACAATGctaccctttttttttcttcttcattgttccatttttcccccaaaagcaTTAGCATAGAAAATGCCACTATCAACTTCTTAGCACCAACCGGAATGAAGACTCTGATCTCCAAACATGTGCATCTAATGCAGGAATAACGCtcatatattaattaattaatctataTTACAATATCTGCCTCGCTAATATAAATACGCAAATAagccatctgaccaatcaggacgTTTCTGTGGCAGGATTAATCACACTATTCACACAATCCGACTAATCTATTACGCCTAAATACTACAGGTTGACCTTTGTCTACGACTTATTTATATAAACAGATCTCTATTAGGATATTTAAcgttattatgaaattattcatatttatcacattaaataaaattcatgcTATACTTGTGACCTAAGAAAGCACtgatataacatttattttaatatattttaatttattccattttcctgctacagctttatttatttatttataagcttGTCCCTGTCACAAGAATAATGTATTCTGAGATGACAAAATAATTTTCtctaaattataaaatgtttcattgcgataatgaattaattacaaTCTagcaaatataaaatgttttcctgAGAAAACGTACTACATGCGCTACAAGCCTATGGAAATTTACTGGTATAACAAATTTAACATAAACTTACATCTGGATCGaagcagaggtgccaacatttatggTTTAGGTATAGACGTTTATGGGTTTTGAcctgttgctatggtgataaAACTATTCTGCCTTTTCAGCTAAAGTAGCGGTGGAAAAATTCACCGAAGGGGAAAGGGCACATAACGTGAAAGACGCGTTTAATTGCGGTAGCGCTGGATTTCACTTTGTGTCGACTATCTaggtgacctctgacctgtgaCTTTACGAGCCTCAGAAAACCAGAGGGCGGGACTCATGGTGTATTTGGTGTACACATCTCTCTGGTTTCTTACTGTGACTTGGCGCACATctggagggaaaaaacaacataaaaatggaaaattagcTCTCATCCACAGGCATACGCTTGGGTATGcggtaaaactttttttttcctgctgggATTTTCTCATAAATAATAAaaataataataataataataataataataataataataataataataattcacctCGAATTTAATTGGTAatcatattatatatcataAAGTATTGAATTATATCGGAGAATGTTACTGGAATATTTTAGGACTGGGTAATAAAAGGTTCCTGTATCGGTCGGGTCACGGTCACGGTCACGGCTGTATATCAGAAACCACAACGTGTTTGCGATCGAGCGCGTTGCTTAcggaatcatttttaaatgcgTAGTGTAGGATATCCAACACAGTCCtgatatcccacaatgcactgggATAGGTTAGCACCGAGACTCTCCAAATGATGTATCCTGAGCCGCCCATTTTACGTGAATgaaaacaaagtgcaaagttTTTAAAATGGACGGCGGCTGATGAGAATACTGCTATTTGACccggtaaaaaaaaacaaaacgaaacacacacacgacccAGAGTCACTGTTTGCGCTTGGGTGTGGCCCTGTTCTCACTCAGGTCCTCTTTGGTCTTCTGGATACATGTGAAGATCTCCTTGAAGAGTGCCCTGTACTCCGGCTGGTACGTGTCGTCCGTGAGGGAGGCTGATTGAGGTTTGAGGGACGCGGCGGGCGTCTGGACGGCTTTGTGGCTCTGTGCGTCGTCTCCGCGTTGGCAGCGCAGCAGCAGCTCCTCGTATTTGGTCTTCAGTACGCTGTACTGCGCGTCCACCTCGTTCAGCAGAGAGATTCCGCGCTGCCTCACCGCCTCCGATCGCCGTATACACGTCAGCTCGTGGCCACGTCTCAGTTCCTGTTCTGacccttcctcttcctctacCACCTCCGCTCCTGACTCCGCCCCCTTCTCCTCAGTGAGGAAGATCACGGCGTCGGCTACAAGCGAGTCTGTAGGTCTAACGCTGGATGATTCCGAGCGCCACAGCTGCCGCAGCTCTTCCACCTCGGCCTCCAGTTCGGCTTGGTGCCGTCGCGCCCCCTCCAGCTGTGCCAGCTGTTCCTCCAGCGCCCGGTTCTCTCGCTCGGTCAGCTCCATAACCTTCTCCGCCGCTTCCCGACGCTCGCGCTCGCTgcccagctgtgtgtgtaggCTACGCAACGCACTCTGCAGGGCAGACTTCTCCTCTTCCACCAGACCTGCATCCAGCGCCCACCACGAGCGATCGTCACTGTGGCTTTCCGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU399424 lncRNA upstream 61603 3033844 ~ 3034394 (+) True G337195
TU399423 lncRNA upstream 76587 3019110 ~ 3019410 (+) True G337194
XR_003404701.2 lncRNA upstream 100726 2926524 ~ 2995271 (+) True LOC113546290
TU399362 lncRNA upstream 225088 2870683 ~ 2870909 (+) True G337138
TU399360 lncRNA upstream 233029 2862527 ~ 2862968 (+) True G337136
TU399479 lncRNA downstream 110320 3212511 ~ 3299308 (+) True G337233
TU399552 lncRNA downstream 387662 3489853 ~ 3491029 (+) True G337304
TU399520 lncRNA downstream 608511 3710702 ~ 3712919 (+) True G337273
TU399623 lncRNA downstream 640946 3743137 ~ 3745935 (+) True G337374
TU399611 lncRNA downstream 657465 3759656 ~ 3762176 (+) True G337363
XM_026945985.2 mRNA upstream 4119 3071900 ~ 3091878 (+) True sdr42e2
XM_034298407.1 mRNA upstream 28025 3041368 ~ 3067972 (+) True vwa3a
XM_034298408.1 mRNA upstream 28025 3041368 ~ 3067972 (+) False vwa3a
XM_034298409.1 mRNA upstream 28025 3043694 ~ 3067972 (+) False vwa3a
XM_034298410.1 mRNA upstream 32084 3041368 ~ 3063913 (+) False vwa3a
XM_034298622.1 mRNA downstream 10050 3112241 ~ 3127730 (+) False mfsd13al
XM_034298620.1 mRNA downstream 10050 3112241 ~ 3127728 (+) True mfsd13al
XM_034298621.1 mRNA downstream 10050 3112241 ~ 3127728 (+) False mfsd13al
XM_034298349.1 mRNA downstream 26513 3128704 ~ 3137973 (+) True si:ch211-165g14.1
XM_034298426.1 mRNA downstream 166747 3268938 ~ 3272927 (+) True znf750
XR_004577078.1 other upstream 703519 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 703525 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 703622 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 725921 2358116 ~ 2370076 (+) False LOC113546300
TU399169 other upstream 774580 2317025 ~ 2321417 (+) False LOC113546301
TU400576 other downstream 1250331 4352522 ~ 4355029 (+) True G338163
TU401842 other downstream 3237316 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 3502466 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 3608824 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 5180769 8282960 ~ 8285204 (+) True G340208

Expression Profile