RNA id: TU399520


Basic Information

Item Value
RNA id TU399520
length 2197
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G337273
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 3710702 ~ 3712919 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTGTTGTTCAACTTCCGCACTCGTTGTATTTTCCCTCTCAAGAACAACAGCTTTGATGGATACAgctgaatgcaaaagtttgcacatcCTTGCTTCAAAAAGATCCCAATAAAATTAACCCAAtgaagcatctttttttttgttgctaagTTTGTTAAGTTTTACATTTGTTCCTTTATcatcacaaataacaaaaattatGATAAAGTTACTGTTCGTTTCATCCATTGCTGCTGGCAGCGATCTCCCTAAACACTTTGATATGTTCTTCTCCAGCTCAGTGAAATGTCAATATTTTCTGTTCGAACCCTTCTGAAAGCTGTATTCCTGATCACGGCAATCTGCTTTAGACTTTCCATGTGACTTATACCAAGGTAAACATGTGTTGTCTGTTTAAGGTAATTAAGCATCTAATAAGTGACTTTCAACTAAATTAACCAGAGAATGTCAGGATGCAAATTTCTGAGCTTGTTAAGAAAGATAACTGTCAGCTGCTGTTATATTTAGACTGTAGATTTCAAACACGAGTTGAACAAATTCTGTTTTGTATGCTGTCAGAAAAAGAGTAATGAACTTGTCTGTCTTCCTTGTTTGTGGGGTGATATCGGTAGCCatctgtacctttaatatgcatctttcacctggaaatgtggctataatatatctttaaaaaatgttttaaggtacataattggaccacAACgaccttttagagtaaagctttaaaggtacattacacGCAtcctaggtaaaagatacaaactaaaggtacaaaaggtgtaccatggagggtaccaccccagcaacaatgAATGGTACCAGCAAGTTTCGTACCATTTTTTTAAGAGTACAGGTAAACCGTTATGCTGATCTtgccattttttgtttgtttgtttgtttgaacacCCAAAAACAAAGGGGTGCAAACTTTGATGTCCCAGGCCAATAATGCTCACTGTCAAGTGCAACTGCATTCTAAACAGTATGCCAAAGTGGTACGACCTACTTGGTTACCATAGTGACCAGGGATGGCGTATTATTGCGACATACTAATAAGTACACAAATATGCAGCCTGGGATTTTACCGCATTAACAGCAATTAGCATAAACAAACTTCCTACTTTGTCCTTGTTAAAAACAGCTCGTATGTAAAGGCTGTAAGGAGTTAACTGTGGTCAATTGCAGTATTATTGTCATATTATTTAGTACAAAATAAGGTTTTGGATTAACGAACTAGCCAATTTTCCATTAAGGAGAAAGTGAAGGATTTGCAGTTGTGttgtgtaattaaattaaattggtATCTAACTGCCACAAATCTGGTCTGTCAAGAACTCATATTGTTATATTGTAGATAAACAGCTAAGCAACCCGGCATGGTTCTGCTTTAGAAAACAGTTCTGTAATGTAGCCTAATTGatactgctttttttttttcctattatgCAACATAAATAAGCACTGATCCTACCAGCAAGGACACACTGGACATGCAACCTCAGGAAGCAGTCGTTCTTACCCACAATCAGACACAAGATGTCCAAACCGACCAGCATCCTGGGGCTGGAGCTGTGAGCCCGGGTCACGGTTCGACTCTGACCGGTTCCGGCTTTCCCGTTCTCCCGCAGCGGCTCCGCGGCTTCACCGCACTCCGCCAACCGCCCCTGGATCTCCAGGTCTCGCTCCACGTCTCCACCGCCGCTGTTCACGGTAAACTTCTCCATATTGCTGCTTAATAGTTTAATAAACCAGATAGGCACTTTCCCTTCGTGTTCGGTTGCTTTTCCAGTCCAGCGTCCGCGCACATGAAGTTTTTGTCTTCCACAGGTATAAAAGTTTAGCTAGAGAGCTTTTCTGAAAGTGAAGCACTAGTGCGCAGGATATCGGGTCATGTTTACAGAGAAATCCTGCTTTAACCGAGCAGATTAATAAGTCACAGACACCGCAGCCGGAGCCAAGTCCCAAATCTGAAGCCAACAGGCACTTTCCGTGTacttagggggaaaaaatctcgCCATCCTCATGCTGGATTAAACCCGGTCCAGGAGCTGTACAGGTCCAGTTCCAGACAGAGAAACCTCACGCTTTCTAAAACACTCCTCAttacaaaacacagaacacactccTCAAACTACCTGAGTCACTGAACTCCATATGGGAGCTTTTTCCTCCCTCACAAGTAAACTCAAAGAGCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU399552 lncRNA upstream 219673 3489853 ~ 3491029 (+) True G337304
TU399479 lncRNA upstream 411394 3212511 ~ 3299308 (+) True G337233
TU399433 lncRNA upstream 608511 3095997 ~ 3102191 (+) True G337197
TU399424 lncRNA upstream 676308 3033844 ~ 3034394 (+) True G337195
TU399423 lncRNA upstream 691292 3019110 ~ 3019410 (+) True G337194
TU399623 lncRNA downstream 30218 3743137 ~ 3745935 (+) True G337374
TU399611 lncRNA downstream 46737 3759656 ~ 3762176 (+) True G337363
XR_003404699.2 lncRNA downstream 56666 3769585 ~ 3771026 (+) True LOC113546270
TU399609 lncRNA downstream 56736 3769655 ~ 3770969 (+) False LOC113546270
TU399613 lncRNA downstream 62767 3775686 ~ 3779213 (+) True G337365
XM_034298474.1 mRNA upstream 75310 3424305 ~ 3635392 (+) True adgrl1a
XM_034298475.1 mRNA upstream 75310 3424305 ~ 3635392 (+) False adgrl1a
XM_034298476.1 mRNA upstream 87003 3424305 ~ 3623699 (+) False adgrl1a
XM_034298427.1 mRNA upstream 405419 3297910 ~ 3305283 (+) True LOC113546219
XM_026945983.2 mRNA upstream 405419 3301167 ~ 3305283 (+) False LOC113546219
XM_034298524.1 mRNA downstream 10270 3723189 ~ 3732164 (+) False tnfsf18
XM_034298523.1 mRNA downstream 11944 3724863 ~ 3732164 (+) True tnfsf18
XM_034298525.1 mRNA downstream 11944 3724863 ~ 3730421 (+) False tnfsf18
XM_026945969.2 mRNA downstream 98707 3811626 ~ 3821302 (+) True qtrt1
XM_026946051.2 mRNA downstream 113040 3825959 ~ 3929254 (+) True LOC113546282
XR_004577078.1 other upstream 1318224 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 1318230 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 1318327 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 1340626 2358116 ~ 2370076 (+) False LOC113546300
TU399169 other upstream 1389285 2317025 ~ 2321417 (+) False LOC113546301
TU400576 other downstream 639603 4352522 ~ 4355029 (+) True G338163
TU401842 other downstream 2626588 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 2891738 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 2998096 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 4570041 8282960 ~ 8285204 (+) True G340208

Expression Profile